Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06950 ATGAGAAACTATTTGCAGTTTCTTTGGCCTCACATCTTGTGTTTCCTATTATCCATGAGTGTTGTACTTATACATCTAGTTGAAACAAAATCCACTATAGAACCATGTAGCTCTGCAGAATCATGCCCCTCTCTTCTCTCTTATCTCTTGCCTTGGGACTCCAAGCTCTCTGAAATTGCAACTCGTTTCAATGTAAATGTTTCTGATATCTTGGCTGCAAACTCTGTTTTCCCCATAACACCATCAAGTTCTCATAAAATCCTTTGTGCAAAATCATTAGTGAAAATACCAATTTCATGTCCTTGTGTGGATGGCATCAGAAGGTCTATGTCAACCAATTACACTGTTCAGGCAGCTGACACACTTGCCTCCATATCAGATGGGTATGGTGGGTTAGTTAGTGCTCAACAAATTGAGATTGTGAACAGCATCAATGATACAAACCCTTTGGCATATGGAAGCAACCTTGTTATACCATTGCCATGCACATGCTTGAACAATGTTAACAATGGGGAAACTGCAATTTATATGTCATATGTGGTGCAGACAGGGGAGAGCTTGGGAAGCATAGCAGCAGCATTTGGTACTACAATTTCAGATTTGGAAAATGCAAATGGACTTGGCCAAGCTAAAGTAGATCCAAGAGATATACTATCTGTTCCTATTGCAGGTACTTGTACCGTCCTTTGCAGCATGTTCATCAGCAACTCTGAAGTGGTACAATGA 726 0.4036 MRNYLQFLWPHILCFLLSMSVVLIHLVETKSTIEPCSSAESCPSLLSYLLPWDSKLSEIATRFNVNVSDILAANSVFPITPSSSHKILCAKSLVKIPISCPCVDGIRRSMSTNYTVQAADTLASISDGYGGLVSAQQIEIVNSINDTNPLAYGSNLVIPLPCTCLNNVNNGETAIYMSYVVQTGESLGSIAAAFGTTISDLENANGLGQAKVDPRDILSVPIAGTCTVLCSMFISNSEVVQ. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06950 241 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Seca11g06950 241 ProSiteProfiles LysM domain profile. 112 158 IPR018392 -
Seca11g06950 241 Gene3D LysM domain 108 168 IPR036779 -
Seca11g06950 241 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 28 223 - -
Seca11g06950 241 SUPERFAMILY LysM domain 113 160 IPR036779 -
Seca11g06950 241 SUPERFAMILY LysM domain 177 221 IPR036779 -
Seca11g06950 241 Pfam LysM domain 179 221 IPR018392 -
Seca11g06950 241 Pfam LysM domain 56 80 IPR018392 -
Seca11g06950 241 Pfam LysM domain 114 159 IPR018392 -
Seca11g06950 241 SMART LysM_2 113 159 IPR018392 -
Seca11g06950 241 SMART LysM_2 178 221 IPR018392 -
Seca11g06950 241 CDD LysM 178 207 IPR018392 -
Seca11g06950 241 CDD LysM 114 158 IPR018392 -
Seca11g06950 241 Gene3D LysM domain 169 227 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06950 Seca-Chr11 169710125 169713531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06950 12 222 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 45.283 1.25e-56 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06950 - - aprc:113855794 344.354