Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06949 ATGGAAATGGCAGCAGGGCAATCTAAAAAACAAGGAAGAAAAAGTAAAGGAAAAGAAAAGGTGACTGCAGGGAAGAATGAGAATTTTCAAACTTTTAGGAAAGTCAGAATTTCATGCAGTGACCCATATGCTACAGAATCTTCAAGCGAAGATGATGGCAAGAAGAAGAAGAAGGGAAAGAAGAGCTCATCGAGCATATACAAAGGTGTTCGATATAGGATATGGGGGAAATGGGCTTCTGAGATTCGTGACCCTTTTAAAGGGGTCAGAGTATGGCTTGGTACCTATGATACTGAACTTGAGGCTGCTATTGCTTATAGCAAAAAGAAAAAAGAGTTTCAGGACAGATTACAAGAACAGAACACAAACAAGCCTAATTTGAAGGATAGCAAACAAGGTTTGATTTGA 408 0.3897 MEMAAGQSKKQGRKSKGKEKVTAGKNENFQTFRKVRISCSDPYATESSSEDDGKKKKKGKKSSSSIYKGVRYRIWGKWASEIRDPFKGVRVWLGTYDTELEAAIAYSKKKKEFQDRLQEQNTNKPNLKDSKQGLI. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06949 135 Pfam AP2 domain 66 107 IPR001471 GO:0003700|GO:0006355
Seca11g06949 135 SUPERFAMILY DNA-binding domain 65 118 IPR016177 GO:0003677
Seca11g06949 135 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Seca11g06949 135 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Seca11g06949 135 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Seca11g06949 135 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 118 - -
Seca11g06949 135 CDD AP2 66 106 IPR001471 GO:0003700|GO:0006355
Seca11g06949 135 SMART rav1_2 66 131 IPR001471 GO:0003700|GO:0006355
Seca11g06949 135 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g06949 135 MobiDBLite consensus disorder prediction 41 65 - -
Seca11g06949 135 MobiDBLite consensus disorder prediction 115 135 - -
Seca11g06949 135 ProSiteProfiles AP2/ERF domain profile. 66 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06949 Seca-Chr11 169706346 169706918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06949 67 114 AP2-EREBP Transcription Factor Family AT2G33710 66.667 3.79e-18 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g06949 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06949 - - lang:109341579 87.4261