Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06922 ATGGATTTAGAAGAGAAGTTCCTTGTTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCTAGTGTGCAAAGTACTCCTGAAAAAAATGGTCATTCGGATGATGGTTCAAGAAGTTCAGAACTCCTTCAGGAGTTCCTGAAATGTGGTCCAAAGAAGGAACTTCTTCGAACTTGCTTTGATAAGGACAAAAAGAACATCTCATCAAAAAGCAAGATGATTCAAACTAAGTCAACTGGTAAGATAATTAAGAAACAAGACACAAAAAAGGTTTCTAGTCTCAGCCATCAGCCCTCTAGGAAGCAACTTCGGAAGAGTGAAAATCCCACACGACTCATACCTCCTTCTGACCAGTCTTCTGATATTGGACAATCAAACACCTGGATCTGCAAAAATGCTGCTTGTAGGGCGGTTGTATCAATAGATGACACATTCTGTAAACGGTGCTCTTGCTGTATTTGTCACCGTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCCAGGGGACTCTTGTGGGTTGTCTTGCCATATTGAATGTGCCCTTCAACATGGAAAAGTCGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGCTGTGCATCCTGTGGTAAAGTAACAGGGATACTTGGATGCTGGAAGAAGCAACTAAATATAGCAAAAGATGCCCGGCGTGTTGATGTACTCTGTTATAGGATATATTTAAGCTACAAACTCTTGGATGGAACTTCAAAATTTAAAGACTTGCATCAAATGGTACAAGAGGCGAAGGCTAAACTGGAGGCAGAAGTTGGACCTGTTGATGGGGTTTCTGCCAACATGGCACGAGGCATTGTCAGCAGACTCCCTATTGCCAGTGATGTACAGAAACTCTGCTCTCTTGCGATTGAGAAAGCTGATAGCTGGCTTGCCACTCTCCCCACTGTAAATCCAGATTCCAGAGAGGGTTCGCTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGTCAAAATCATTTTAATTGAAATGTCAAATATATGTTCTGAGGACATCAAGGGGTACAAGCTCTGGTATTACAAGAGTCGGGAAGAATCACCCACAAAAGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCAAACCTTCAGCCTTGCACAGAATATACTTTTCGAATTATATCTTATACTGATGCGGGTGACCTGGGTCATTCCGAGGCTAAGTGTTTCACCAAGAGCATCAACATAATTCACAACAATCCCTCTTCGTCTGTTGCTATGAATCATAAAAAAGAGAACCTTCAAAATGGGGGCAATTCTTCTGGCTGCAAGATGGAGCTCAATCCCACAGTGAAAGACTCTGGATTTAAGGTTCGTGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAGCAAGGTTACTTTGAGGAGTTTTGCTGTGATGATAAGAAAAATTGTTGTGGACAAAGTGAAATGAACAAGCCTAAAATTCCAGAAACGCAGTTGCCTTCAGATTCACGAGGCCTTGATTTAAATGTTGCCTCAGTGCCTGATTTAAATGAAGAGATAACTCCTCCTTTTGAGTCTTCTAGGGATGAAGATAATGGTTGCACTTTGCTACAGGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGTGACTCCCAAACCTGGCCCCATGGGCCAACAGGAGAAGTTTCAGCTGTTGACTCTCGCAGAAATGTCTGCAGGAAAAGGATAGCCAGCACAAACGAAGAGACACAGGATAGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGCTTCATGCTCCTTGGATGAGAGCTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACAGGAATTTAGATTGAAATTGCTAACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTTATTCAAACTCTTATCGACGATCCAGGAAGTTTGGCGGGGCAACTGGTTGACACCTTTTCTGATATTATATCCAGCAAGAGACCAAGAAATGGATTCTGTAGTAAAGCTGTGGCATCAAATTAA 2163 0.4207 MDLEEKFLVKVSGVQSLSSSVQSTPEKNGHSDDGSRSSELLQEFLKCGPKKELLRTCFDKDKKNISSKSKMIQTKSTGKIIKKQDTKKVSSLSHQPSRKQLRKSENPTRLIPPSDQSSDIGQSNTWICKNAACRAVVSIDDTFCKRCSCCICHRFDDNKDPSLWLVCTSESTPGDSCGLSCHIECALQHGKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYKLLDGTSKFKDLHQMVQEAKAKLEAEVGPVDGVSANMARGIVSRLPIASDVQKLCSLAIEKADSWLATLPTVNPDSREGSLPAACKFVFEEVTTSSVKIILIEMSNICSEDIKGYKLWYYKSREESPTKDPVSVFPKSQRRILISNLQPCTEYTFRIISYTDAGDLGHSEAKCFTKSINIIHNNPSSSVAMNHKKENLQNGGNSSGCKMELNPTVKDSGFKVRDLGKILRLAWAQEQGYFEEFCCDDKKNCCGQSEMNKPKIPETQLPSDSRGLDLNVASVPDLNEEITPPFESSRDEDNGCTLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWPHGPTGEVSAVDSRRNVCRKRIASTNEETQDSDSTLINGSPLRISDASCSLDESFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPGSLAGQLVDTFSDIISSKRPRNGFCSKAVASN. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06922 720 Gene3D Immunoglobulins 315 417 IPR013783 -
Seca11g06922 720 MobiDBLite consensus disorder prediction 14 38 - -
Seca11g06922 720 MobiDBLite consensus disorder prediction 107 121 - -
Seca11g06922 720 SUPERFAMILY Fibronectin type III 333 411 IPR036116 GO:0005515
Seca11g06922 720 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Seca11g06922 720 MobiDBLite consensus disorder prediction 68 121 - -
Seca11g06922 720 MobiDBLite consensus disorder prediction 14 28 - -
Seca11g06922 720 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Seca11g06922 720 CDD FN3 332 411 IPR003961 GO:0005515
Seca11g06922 720 Pfam Fibronectin type III domain 333 413 IPR003961 GO:0005515
Seca11g06922 720 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 715 IPR044514 GO:0010048|GO:0040029
Seca11g06922 720 MobiDBLite consensus disorder prediction 568 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06922 Seca-Chr11 169424277 169431112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06922 124 711 PHD Gene Family AT3G24440 49.418 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06922 - - gmx:100816128 1238.79