Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06919 ATGACAAGTCGACTGAAGGAGGATGAGAAGAATGAACGAATAATTCGAGGCCTTCTCAAACTTACGCCGAATCGAAGATGTATTAACTGCAATAGCCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTTACACATCGAGTAAAATCAATTTCAATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGGGGAAATCAGCGTGCAAAAGAAATATATTTTAAAGAGTGGGATCCACAACGTCATTCTTTGCCGGATAGCAGTAATGTTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCAGTGGAGAGAGAACCTTTGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATCTTTATGAAAACAAGAGGATCGAGACATATCAGGGAGGACCTAAGAGTCCCCCATATGAGGACACATATGAACGTCATTACACTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAACAAAATAGGCAATATGGTGAATACAAGAGAAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGGGAAGATAGATTTGGGGATGGACAGAAATTCGAAGATCATAGAATATCTGATGGAGATAATAAGGTGGGAAACCAATCACCTGAGCGAGCCAAAGATCTGGGTTCTTCAAGCCCACCTGTGGCTCGACCTGTAAGAGATATTTTAGGAGAAAATGTAGTACCTCTTCGAATCAGTGAACCCCCCAAAACAAACAACGGTCAGGCTACTAATGGCTCAGCACTCACACAGAGAACTGCATCTTCGAGTAGCTTGGCATCCAGCAATGGAACCCCAGCAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCTCCAGCAATTCCTCTAGCCCAACAAACTACCGTGGCTCAACTTGTGATGCCAGCAAATTCCAGCAATAACAACTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCATCCCATGGTCCTTCAAATGTAAATCCACTGGAATCTGTGCTGTCCCAGTTGTCAGTACCGGCATCATTACCTTCTCATGTTTCTGGAGTCCAAGGGTCTGTGATGGGATCAGCTCTTACTGCTACTGCTGCTGCTGCTCCAACTGTTAGCAGCTTCTCAACATTCCTAGCTAGTGGTGCTTCAGTAACCTCTTCTGGATTAACAACTGCATCGTCTCTCAATAATGCAGGACAGTGGGCCAATTTGCAGCATCAGCAACCTTTGTTCACCACTACTGTTAGTCAGCATGTTATTCAACAATCTACACCACCAGTAGGTGGAGCTTTGAATAATCAGCCCTGGAATATGCCTTCTGTACCTGCAGTACAGGGGCATCCAAGCACACCAATGCTACATGCTTCCCACCATATCTCAAATTCTGTCAATAAGGCTAAATCCAGTGTTGTTTCACAACCTTCTACGGTAGACATAAAACCAAGTGGAAGAAATGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCATCCTTCCCTGCTCCAGTTCCAGGTTGGCAAATGGGTCAACCGCCTAGCATGGGTATCTCAACTCAATATAATAATATGGCGCCCATGCCAAGTTTTCTGCCACCATCAAAATCAACAAATCCATTTGATGTCAACAATGAACCAACTCCAGTTCAAGCCCCAACTTTTCCTTCCATGTCATCTTTGCAAAGTGCTCTGCCTAGTGTAACACCACCAGCCACAATGCAGCCATCAAACATGGGTAATTTGTCTCTTTCCTGGAGACCACCCTCATCATCATCATATGTATCAGCGCTGCCTCCACAAGCACAAACTCTTGCGTCAGCAATGGGACCTGGGGCATACATGGGGCAACAAATGCCAACTAACATTCCAATGCCAAGGCATCAAGGAATTGGGAATTTTGGAACTGAGGGAGCTGCTTTTGGCTTCTCAACCACTGCTACCCCAAACCCCTTCCCTGCAGGAGGGAACCCTTTTGGATGA 2076 0.4485 MTSRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFSGERTFDKPPRVKGDKDDLYENKRIETYQGGPKSPPYEDTYERHYTDRSSPGGRSPGYDQQNRQYGEYKRSPGRPPIINDWRREDRFGDGQKFEDHRISDGDNKVGNQSPERAKDLGSSSPPVARPVRDILGENVVPLRISEPPKTNNGQATNGSALTQRTASSSSLASSNGTPAEVKLETIKSLIDFDDDPEPPVAPAIPLAQQTTVAQLVMPANSSNNNWASFDVAPEAKASHGPSNVNPLESVLSQLSVPASLPSHVSGVQGSVMGSALTATAAAAPTVSSFSTFLASGASVTSSGLTTASSLNNAGQWANLQHQQPLFTTTVSQHVIQQSTPPVGGALNNQPWNMPSVPAVQGHPSTPMLHASHHISNSVNKAKSSVVSQPSTVDIKPSGRNELPEDLFTVKYSSFPAPVPGWQMGQPPSMGISTQYNNMAPMPSFLPPSKSTNPFDVNNEPTPVQAPTFPSMSSLQSALPSVTPPATMQPSNMGNLSLSWRPPSSSSYVSALPPQAQTLASAMGPGAYMGQQMPTNIPMPRHQGIGNFGTEGAAFGFSTTATPNPFPAGGNPFG. 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06919 691 MobiDBLite consensus disorder prediction 263 297 - -
Seca11g06919 691 MobiDBLite consensus disorder prediction 198 224 - -
Seca11g06919 691 MobiDBLite consensus disorder prediction 127 248 - -
Seca11g06919 691 MobiDBLite consensus disorder prediction 261 297 - -
Seca11g06919 691 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Seca11g06919 691 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Seca11g06919 691 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Seca11g06919 691 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Seca11g06919 691 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Seca11g06919 691 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Seca11g06919 691 CDD ArfGap_AGFG 12 122 - -
Seca11g06919 691 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Seca11g06919 691 MobiDBLite consensus disorder prediction 127 146 - -
Seca11g06919 691 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Seca11g06919 691 MobiDBLite consensus disorder prediction 175 189 - -
Seca11g06919 691 PANTHER ARFGAP/RECO-RELATED 1 691 IPR044820 GO:0005096
Seca11g06919 691 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06919 Seca-Chr11 169380250 169388747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06919 12 122 C2H2 Transcription Factor Family AT4G21160 33.333 3.56e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06919 - - gmx:100815114 1090.87