Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06917 ATGAAGAAGGAAGCTAATTACTCCTCCAATCTCACACTCCTCATTGCGGTGTTTCTAGGCACACTCTCCCTCTGTGCCTCCCACCAAAGCAATGGAGCACTCACTAACGCTGAAGCCACATATATCAGGCAACGCCAGCTTCTTTATTACAGGGACGAGTTCGGTGACAGAGGAGAGAACGTCACCGTAGACCCCTCTCTTGTTTTCGAGAATGACCGTATCAAAAATGCTTATATAGCTTTACAAGCTTGGAAGCAAGCCATTCTCTCAGATCCCAGAAACTTCACGGTTAATTGGATTGGATCCAATGTGTGCAACTACACCGGGGTTTACTGTGCACCGACACTCGACAATCCCAACATTCGTACCGTTGCCGGCATTGATCTCAACCACGCCGATATTGCCGGATACTTGCCAGAAGAGCTTGGCCTTCTGGAAGATCTTGCGCTTTTCCACATCAACACCAACAGATTCTGTGGCACTGTGCCGCACAAGTTTGATAGGTTGAAGCTGCTTTTCGAACTGGATCTCAGTAACAACAGGTTCGCAGGGAAGTTCCCGGAGGTGATTCTGCGGCTTCCAACGCTCAAATTCTTGGATATCAGATTCAACGAATTCGAAGGAGCGGTGCCTAGGGAGTTGTTCGACAAGGATCTGGACGCTATTTTCATCAACGATAACCGTTTTGTGTTTGATCTTCCTGATAACTTTGGCAACTCACCGGTTTCCGTCATCGTTCTAGCGAACAACAGGTTCCACGGGTGTATTCCGGCGAGCGTGGGAAACATGTCCAACTTGAACGAGATCATTTTGATGAACAACGCATTCCGTTCCTGTTTACCTTCTGAGATCGGGTTGCTGAGAAACCTGACGGTTTTCGATGTGAGCTTTAATCAGTTGTTAGGTCCTTTGCCTGACACAATTGGAAACGTTGTGAGCTTGGAGCAGTTGAATGTAGCACACAACTTGCTCTCTGGGAAAATCCCTGCCAGCATTTGCATGTTGCCTAACCTTCGGAACTTTACTTATTCAGATAACTTCTTCACCGGGGAGCCACCGGCGTGCCTGAGCTTGCCGGCGTTTGATGACCGGAGGAACTGCTTGGCATCGAGGCCGTTACAGAAGTCTCAGGAACAATGTAAGTCGTTTTTGTCTAAGCCTGTGGATTGTAACTCCTTTGGTTGTAAACCATTTGTTCCTTCTCCACCCTCCCCAACTAAACCTTCCCCACCCTCACCAACTAAACCTTCGCCCTCACCAGTTATTGCACCTTCGCCACCGCCGGTAGCGGTTCCTTCATCACCACCGCCTGCGGTGGCACCTTCATCACCACCGCCTGCAGTGACACCTTCCCCTTCACCACCTGCCTACCCTCCACATTCTCCTCCTTCACATCCACCACCACCTGCAGTGACACCTTTCCCTTCACCACCTGCCTACCCTCCACATTCTCCTCCTTCACATCCACCACCACCAAATTCACCACCAACACCCGCTCATATATTCTCCCCACCACCACCTTCTCCTTATTATAGTCCACCGCCGCTGCCATCTCCACATCCCCCTCACTCACCTCTGCCTCCATCTCCACCGCCACCTCCTCCCTCTGTTCACTCACCACCCCCACCATCTCCACCGCCTTGCATAGAACCTCCTCCACCCCCACCATCACCACCACCTTGTGGAGAGCATTCACCCCCGCCCCCCCCACCACCTATTCCCACACCTTACGTACCACTACCCTCCCCATCTCCCCCTCCGCCACCTGTGTATGTTTCTCCACCTCCGCCGGTTCACTATACTTACCCATCACCACCACCCCCTCCCCCGGTTCAATATAGTTCCCCTCCACCACCACCACCCCCTGTTCATTACGGTTCACCTGCGCCACCAGTATACCATTCTCCGCCGCTAGCATCACCGCCTCCGTGCCATACTCCATCTCCACCTGCCCCTGTATATGAAGGGCCTTTGCCACCTATCTTTAGAGTCCCATATGCATCGCCTCCACCGCCACCATTCTATTGA 2028 0.5207 MKKEANYSSNLTLLIAVFLGTLSLCASHQSNGALTNAEATYIRQRQLLYYRDEFGDRGENVTVDPSLVFENDRIKNAYIALQAWKQAILSDPRNFTVNWIGSNVCNYTGVYCAPTLDNPNIRTVAGIDLNHADIAGYLPEELGLLEDLALFHINTNRFCGTVPHKFDRLKLLFELDLSNNRFAGKFPEVILRLPTLKFLDIRFNEFEGAVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPASVGNMSNLNEIILMNNAFRSCLPSEIGLLRNLTVFDVSFNQLLGPLPDTIGNVVSLEQLNVAHNLLSGKIPASICMLPNLRNFTYSDNFFTGEPPACLSLPAFDDRRNCLASRPLQKSQEQCKSFLSKPVDCNSFGCKPFVPSPPSPTKPSPPSPTKPSPSPVIAPSPPPVAVPSSPPPAVAPSSPPPAVTPSPSPPAYPPHSPPSHPPPPAVTPFPSPPAYPPHSPPSHPPPPNSPPTPAHIFSPPPPSPYYSPPPLPSPHPPHSPLPPSPPPPPPSVHSPPPPSPPPCIEPPPPPPSPPPCGEHSPPPPPPPIPTPYVPLPSPSPPPPPVYVSPPPPVHYTYPSPPPPPPVQYSSPPPPPPPVHYGSPAPPVYHSPPLASPPPCHTPSPPAPVYEGPLPPIFRVPYASPPPPPFY. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06917 675 PRINTS Pistil-specific extensin-like signature 428 451 IPR003882 -
Seca11g06917 675 PRINTS Pistil-specific extensin-like signature 463 481 IPR003882 -
Seca11g06917 675 MobiDBLite consensus disorder prediction 400 588 - -
Seca11g06917 675 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Seca11g06917 675 SUPERFAMILY L domain-like 79 360 - -
Seca11g06917 675 MobiDBLite consensus disorder prediction 603 650 - -
Seca11g06917 675 Gene3D Ribonuclease Inhibitor 242 385 IPR032675 -
Seca11g06917 675 Gene3D Ribonuclease Inhibitor 76 241 IPR032675 -
Seca11g06917 675 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Seca11g06917 675 Pfam Leucine rich repeat N-terminal domain 79 112 IPR013210 -
Seca11g06917 675 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06917 Seca-Chr11 169364484 169366511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06917 27 427 Leucine-rich Repeat extension Gene Families AT3G24480 71.393 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06917 - - gmx:100814585 677.552