Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06916 ATGCGCTTCACTAGTAACTCTGGAAATCACCATGCAGTGAACTTCAACACCTCTAGAGGGTTTCTCACCAAACTCAAAATAGGAGTCAAAGAAACGTTTTTCCCTGACGATCTCTTTAGGCATTCCAAAAATAAAGACAAGCCACTACTCAAATGGGTCCAGTATTTCGTCCCAATCTTTGAGTGGCTCCCCACTTACACTTGGCGCATGTTTTACTCTGACTTCCTCGCCGGCCTCACCATCACCAGCCTCGCTGTCCCTCAAAGCATTAGCTTTGCCAAACTCGCCAACCTTCCTCCCATTATTGGCCTATATAGCAGCTTTGTCCCACCTCTTGTGTATGCTATTTTTGGGAGCTCAAGGCACATATCAGTGGGGACGACTGCTTCATTATCAATGCTTATATATCAAAATGTTTCAACCGTTGCAAATCCAGAAGAGGACCTAAACCTCTATATTCATTTGGTTTTCACAACTACCTTTATTGCTGGCGCCTTCCAGGCTTGTTTGGGTATTCTTAGGTTGGGGATATTGGTGGATTTCTTGTCCGGTCCTACCATCACTGGCTTCATCGGAGGGTCAGCAACAATTCTCGGCGTCCAACAACTGAAGGGCATTTTCGGTATCAAATATTTTTTGGGTAAAATGGACCTCATAACACGGTTGAAGGGCTTATGGACCAGAAGACACGAGATGAGGTGGGAGACCATAGTTCCGGGTGTGATCTCCCTTGTGTTCCTGCAGTTTACTAAATACTTGAGGAATAAGAACCCAAAACTCTTTTGGTTATCAGCTTTAGCTCCAATGACAACTGTCATAACTGCTGGTGTCTTGACTTATTACCCCATTGAAGGCCAAAGACGTGGGATTCAAATGGTGGGTCATGTAGACAAAGGAATAAATCCTTTTTCCATCCAGAATTTTAACTTTGACAGTAAATATTTACCTGTGATATTGAAAGCTGGTTTTATCACAGGCGTACTATCACTGGCTGAAGGAATAGCAATAGGAAGAAGCTTTTCTGTTATTAAAAACACACCTCATGATGGGATCAAAGAGATGATAGCTTCTGGTCTTATGAACTTATGTGGTTCTTTTACTTCATGTTACATGACTACCGGAACATTTTCCAAAACGGCTGTGAATTACAGCGCAGGGTGTGAAACAGCCATGTCAAACATAGTTCAGGCGTTACTAATGGCACTCGTACTGAAGTTTTTGACACCATTTATTGGTTACATCCCTCTTTTTGCTCTATCAGCTATTACAGTCTCCGCCGTGATGGGGTTGATTAACTATACCGAAGTTATTTACTTTTATAAAGTTGACAAGTTTGATTTTATTATTTGCATGACGGCCTTTCTTGGTGTAATCTTTATAGCCTCCGATGTTGGCTTCATGTTGTCAGTTGGTCTTAGTGTGCTTAGGGCACTCTTACATGTGGCTAGGCCTGCGGCATGTAAGCTTGGAAAGTTACCTGACTTGGATATATATCGAGATGTTGAGCAGTATACTGTTTCAACATTCCCAGGTGTTCTAATTTTACAACTTGGTTCTCCCATTTACTTTGCAAATTCTTCCTACATCAAAGAAAGAATCATGAGGTATATTCGAAGTGAGCAAGACTCTAATGGACAAATCGTTGAGCAGATCATACTCGATTTGTCAGGAGTGACATCCATTGACACCACGGCTATTGAAGTATTGTTGGAAATAAATAAAATCTTGGAAAGGATTGGAATCAAGATGTCATTAGTAAACCCGAGTATGGCAGTTTTGGAGAAACTGATATCATCCAAGTTTGTTGACAAGATTGGGAAGGAGAAATTTTTTCTCACATTGAAAGATGCAGTAAACGCAAGTCAATTCTCATTTTGTAAATCGAAGACAAATGATCTTGAAAAGATAGTTGGAGAAATAAATATTGTCTAG 1932 0.4084 MRFTSNSGNHHAVNFNTSRGFLTKLKIGVKETFFPDDLFRHSKNKDKPLLKWVQYFVPIFEWLPTYTWRMFYSDFLAGLTITSLAVPQSISFAKLANLPPIIGLYSSFVPPLVYAIFGSSRHISVGTTASLSMLIYQNVSTVANPEEDLNLYIHLVFTTTFIAGAFQACLGILRLGILVDFLSGPTITGFIGGSATILGVQQLKGIFGIKYFLGKMDLITRLKGLWTRRHEMRWETIVPGVISLVFLQFTKYLRNKNPKLFWLSALAPMTTVITAGVLTYYPIEGQRRGIQMVGHVDKGINPFSIQNFNFDSKYLPVILKAGFITGVLSLAEGIAIGRSFSVIKNTPHDGIKEMIASGLMNLCGSFTSCYMTTGTFSKTAVNYSAGCETAMSNIVQALLMALVLKFLTPFIGYIPLFALSAITVSAVMGLINYTEVIYFYKVDKFDFIICMTAFLGVIFIASDVGFMLSVGLSVLRALLHVARPAACKLGKLPDLDIYRDVEQYTVSTFPGVLILQLGSPIYFANSSYIKERIMRYIRSEQDSNGQIVEQIILDLSGVTSIDTTAIEVLLEINKILERIGIKMSLVNPSMAVLEKLISSKFVDKIGKEKFFLTLKDAVNASQFSFCKSKTNDLEKIVGEINIV. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06916 643 ProSiteProfiles STAS domain profile. 502 621 IPR002645 -
Seca11g06916 643 CDD STAS_SulP_like_sulfate_transporter 508 614 - -
Seca11g06916 643 PANTHER SULFATE TRANSPORTER 28 624 IPR001902 GO:0016020|GO:0055085
Seca11g06916 643 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020|GO:0055085
Seca11g06916 643 SUPERFAMILY SpoIIaa-like 503 620 IPR036513 -
Seca11g06916 643 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271|GO:0008272
Seca11g06916 643 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020
Seca11g06916 643 Pfam STAS domain 505 617 IPR002645 -
Seca11g06916 643 Gene3D STAS domain 483 624 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06916 Seca-Chr11 169352574 169359258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06916 4 629 Inorganic Solute Cotransporters AT5G19600 54.747 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06916 K17471 - gmx:100789107 812.372