Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06889 ATGGGGGAAGGTGAGGGGGGTGATTTCCCTCCCAAGAATGCATCGTCGGAGGGTGTTGCAACAGTGCTGCCATCGAAGAAGCTTGCCAGGCAGCTTGATTTCACCGGCTTTGGTGGGATTCCGGCAGGTTCGCCTTTGCCGGAACACCCGCAGCCACCGACACTGCCGCCGCCGCCTCCTCCTTCAGTCAGGGCTGTGAAACCAGAATCTCCAAAATCAAGATCAAGACCCAACTTTGAAATGAAAGATGGTACTCCAAAGAAGCAAAAGCAGTGCAATTGTAAACATTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAATTGTGTAAATTGTTATAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCTACCCTAGAACGCAATCCAAATGCTTTTAGGCCAAAAATTGCGAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGAGGCTGGGGAAATTTTAATATTGGGAAAGCACAACAAGGGTTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAATATTCTTTGTTCTGAAAACTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAAGCTTTATTCCATGGAGATCAAAATAACAACATGGCATATATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTGTTGGTTCATCTGGTTATTCATCACCGCCAGTATCAAGAAAAAGAAAAGGTCCAGAACACTTCTTTGGGCCGACTGTGAAGGATCCAACTGTTGGCAGAATGGGACAACAGGCAAACCATGTCAGAGGTCCTGCTCCCTCCTCATCCTTGTCTCCTATCCCAGGTGCTCGTGTTGGACCTGCATCATTAGGACCTTCAAAATTTATGTACAGGTCTCTTTTAGCTGACATAATACAACCACAGCACCTGAAGGAGCTTTGCTCAGTTCTGGTGCTTGTATCTGGACAAGCTGCTAAGACACTTACAGACCAGAAAAATTTATTGGATAAGCACACAGAGGATCAGATGGAAACTTCTCTTGCTTCAACTCAAGAGCAATTACCAAGCCAAAAAGAAGCTGATGTTGAGAAAGCTATGGCTAATGATTGTTCGAGTGCAAACCAAACAGATAAAATCAGCCCTGATAATTCCAGTTCAGACGGTGCTGATGTCCCAAAAGGAAGACCAATGTCTCCTGGAACTTTAGCATTGATGTGTGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCCCTATTGGACCAATGACCCATGCTTGCAACACTTCTGCGCAACCGCCTTATGGACAAGGAATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACAAAATTTAGAGATTTTCTTAATAGGGTTATCACTATGGGAGAAATAAACGAGACAAAGTGTTCTTCATTAGCAAGAAGTGAGTTAGAGAGTCAAAAGGACCCGATCATCAATGGCACTGGAAATGGCAGTACTGAGGCAACGCATCGGCAGGGAACCGTTATTAATGGTGTTGCCAAAGTTGGCAACAACATTTCAACACCTTTGGTCCCTAGTAGTCTTATTCCTGAAAATGGGGAAATTAAGCTGAAGGTTGAAAAATAG 1662 0.4428 MGEGEGGDFPPKNASSEGVATVLPSKKLARQLDFTGFGGIPAGSPLPEHPQPPTLPPPPPPSVRAVKPESPKSRSRPNFEMKDGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREEAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAYIQQAANAAITGAVGSSGYSSPPVSRKRKGPEHFFGPTVKDPTVGRMGQQANHVRGPAPSSSLSPIPGARVGPASLGPSKFMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLTDQKNLLDKHTEDQMETSLASTQEQLPSQKEADVEKAMANDCSSANQTDKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPIGPMTHACNTSAQPPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPIINGTGNGSTEATHRQGTVINGVAKVGNNISTPLVPSSLIPENGEIKLKVEK. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06889 553 MobiDBLite consensus disorder prediction 69 90 - -
Seca11g06889 553 SMART CXC_2 172 213 IPR033467 -
Seca11g06889 553 SMART CXC_2 87 127 IPR033467 -
Seca11g06889 553 MobiDBLite consensus disorder prediction 356 415 - -
Seca11g06889 553 MobiDBLite consensus disorder prediction 383 402 - -
Seca11g06889 553 MobiDBLite consensus disorder prediction 45 66 - -
Seca11g06889 553 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g06889 553 PANTHER TESMIN/TSO1-RELATED 48 482 IPR028307 -
Seca11g06889 553 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 89 124 IPR005172 -
Seca11g06889 553 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 175 209 IPR005172 -
Seca11g06889 553 Coils Coil 122 142 - -
Seca11g06889 553 ProSiteProfiles CRC domain profile. 88 212 IPR005172 -
Seca11g06889 553 MobiDBLite consensus disorder prediction 246 300 - -
Seca11g06889 553 MobiDBLite consensus disorder prediction 34 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06889 Seca-Chr11 169172904 169178654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06889 1 514 CPP Transcription Factor Family AT4G29000 55.806 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca11g06889 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06889 - - gmx:100786353 849.351