Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06888 ATGGAGATGGAGATGGAGCGTCCATCCAAGAGTTGGAGCATCCATACCCGATCGGAAATTATTGCTAAATACCAAGTCATGGAGCGCATTGGCTCCGGAGCTTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGATGACCTCACCGTCGCCCTCAAGGAAATTCACGACTACCAGTCTGCCTTCCGTGAAATCGAGGCGCTGCAGATGCTTCAGGGCTCTCCAAACGTCGTCGTCATGCACGAATACTTCTGGCGCGAAGATGAGGACGCCGTTCTCGTCCTCGAATATCTCAGGACCGACTTGGCCACCGTCATCGCTGACGCCGCCAAGGACAGGGAACGAGGAGGGCGTCTTCCTGTTGGGGAAATCAAACAGTGGATGATTCAGATTCTTTGTGGCCTTGACGCCTGTCACCGGAACATGATCGTGCATCGAGATTTGAAGCCCTCTAATCTCTTGATTTCCGATAGTGGCGTCCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTAGCAGAGCCTGAATTCTATGCTTCGGAGGGGAACCCACAACCATGTGAACATGATACTTCGAATCAGGAAAGTTCACTACATCTTCCTGAAGCTTTTCCTCAGACAGATAACTTAAGCCAAGCAGGATATGGAAATCAAGAGCAGGGAACTGTTTGTCATGAAGAATATTTTAGTGTTCTAGATGAGCTGAAAACAAAGAGCTCTGCAGATGACATTGATAAGGATACAAGCATTCATGATGGAAATACCTCTTGTCTTGCCACGTGCACAACAAGTGACATAGATAACGATCCTTTGAAAACTTCTATTAGTTATGAGGAAATGGAGGGGGAAGGTAAAGAACTTGGTTGTTTCACATCATGTGTTGGAACTCGTTGGTTTAGGGCTCCTGAGCTGCTTTATGGATCCACAGACTATGGTTTAGAGATTGATCTCTGGTCCTTGGGATGTATTTTTGCGGAGCTCTTTACACTGAAGCCCTTATTTCCTGGAACAGCTGATATTGATCAGCTCAGCAGAATAATTAATGTTTTGGGAAACCTTGATGAGAAAGCTTGGCTTGGTTGTTCAAAACTTCCTGATTATGGAATAATCTCATTTAGCAAGGTAGAAAATCCCATTGGTCTTGAAGCCTGCCTGCCCAACTGCTCGCTTGATGAAGTGTCTCTAATAAAACAACTGGTTTGTTATGATCCGGCAAGGAGAGCTTCAGCAATGGAGCTACTCCAAGATAAATACTTTAATGAAGAACCTCTTCCTGTTCCTGTTTCTGAGCTACGAGTTCCTTCAACCAGAAAAGGACAAGATGAGGATTCCCTTGGTGGGTGGCATGATTATAATGACTTGGATTCTGATTCTGATTTTGATGATTTTGGCCCTATGAATATCACCAGAACTGGTACCGGTTTCTCCATACAGTTTTCTTGA 1443 0.4574 MEMEMERPSKSWSIHTRSEIIAKYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVMHEYFWREDEDAVLVLEYLRTDLATVIADAAKDRERGGRLPVGEIKQWMIQILCGLDACHRNMIVHRDLKPSNLLISDSGVLKLADFGQARILAEPEFYASEGNPQPCEHDTSNQESSLHLPEAFPQTDNLSQAGYGNQEQGTVCHEEYFSVLDELKTKSSADDIDKDTSIHDGNTSCLATCTTSDIDNDPLKTSISYEEMEGEGKELGCFTSCVGTRWFRAPELLYGSTDYGLEIDLWSLGCIFAELFTLKPLFPGTADIDQLSRIINVLGNLDEKAWLGCSKLPDYGIISFSKVENPIGLEACLPNCSLDEVSLIKQLVCYDPARRASAMELLQDKYFNEEPLPVPVSELRVPSTRKGQDEDSLGGWHDYNDLDSDSDFDDFGPMNITRTGTGFSIQFS. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06888 480 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Seca11g06888 480 SUPERFAMILY Protein kinase-like (PK-like) 11 433 IPR011009 -
Seca11g06888 480 Gene3D Transferase(Phosphotransferase) domain 1 13 208 - -
Seca11g06888 480 Pfam Protein kinase domain 24 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06888 480 Pfam Protein kinase domain 285 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06888 480 Gene3D Transferase(Phosphotransferase) domain 1 249 434 - -
Seca11g06888 480 FunFam Cyclin-dependent kinase F-1 15 109 - -
Seca11g06888 480 SMART serkin_6 24 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06888 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Seca11g06888 480 MobiDBLite consensus disorder prediction 179 198 - -
Seca11g06888 480 ProSiteProfiles Protein kinase domain profile. 24 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06888 480 PANTHER CELL DIVISION PROTEIN KINASE 23 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06888 Seca-Chr11 169166837 169169860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06888 6 479 Core Cell Cycle Gene Families AT4G28980 63.103 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Seca11g06888 Pkinase 3.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06888 - - ahf:112726382 727.243