Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06884 ATGACAGACTACGATAACCCGCCGCCTGGAAGTGGGAAACATACACCTCCCAAAGACTTTGTCTGCCCAATAACTAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACTTAACTTGTCCTATAACTCGCCAGAAGCTGCAAAACACCCAGCTACCTAAGACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACGCAACCCCAATTCAGTCCCGCCACCATGTGAGAGTCCATACGAAGATACCGAGGCAGTAGTGAAGACAACAATACCTTCAACTTCTCCTAATAGTGTAATAACACAAGCCACCTTTGATGGGATGATTAGTGAGTTACGCCATGCAATCAATAACCTGTATATGTCAGAGATTCTCGAGGAATCTGAAATGGCAGTGCTTCAAATCGAGAAATTGTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGTATGCTATCAAAACCTCCGATAATTAATGGGTTTGTGGAGATTCTTTTGAATTCTGTTGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTGGCCGAGATGGGCTCTAGAGACAATGCCGTTATCCAGACTCTCACACGTGTGGATACTGACGTGGAATGTATCATGGCTCTTTTCAAGCAGGGATTGACAGAGGCTGTTGTTCTGTTGTATCTCCTAAACCCTTCCACTGTGACTCTTACAGAGATGGCCATAGTGGAGTCTCTCATAAGAGTTTTTGATAGGAAAGAGGAAGACTTGGTTAAGATGTGTTTGAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACAGATTATTGGAAGCAATGAAGAGATGATTGCATCTTTGGTTGTCAAGGCTCTTTTCTCTGAAAAAGCAATTGGAACCATTGTCAGCAGCTTGGGAGCTGAGTGGGCAGAGGAGAGAATTGCTGCAGTGGAGATCTTATTGAGATGCATGGAAGAGGATGGAACTTGCAGGAACATCATTGCCGATAAAGCAGAGCTTTCCCCTATTTTGGAAAGCTTCATCGGTGCAACTGATGGAGAGCGTTTTAAGATTGTTAAATTTTTTTCTGAGTTAATCAAATTAAATAGGAGGACATTCAATGAACAAATCCTCCACATTATCAAGGAAGAAGGACATTTTAGTACAATGCATACTCTCCTTATTCATTTGCAGACAGCCCTTCAAGATGAATGTCCAGTCATGGCCGGCCTCTTACTCCAACTTGATCTTCTGGTTGAACCAAGAAAGATGAGCATATACCGTGAAGAGGCGATGGACACTCTTATTTCATGCCTACGAAACACAGATTTCCCTGCTACCCAATTAGCAGCTGCTGATACAATCATGTCACTGCAAGGGAGGTTCAACTTCACTGGAAAGCCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAGTCTTGTGCAGGTGGATAAGATCAACAACTTCTGCCCAGATCAACAAGTTCCAGAAGAAGAAAAGGCAGCTGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGTATACTTTTTGAAGCTTTAGCAGATGGCATGAAGAGCAGATATCCAGAACTACGTTCAGCATGCTTTATATCAGCTACGTGGCTCACATATATGTTGACCATTCTACCAGACACGGGGATACAAGGAGCAGCCCGTGTCTGCTTGCTAAAGCAGTTCATAACTAAATTAAATTCTGCTAGGGACGTTGAAGACAGAATCCTTTCTATGCTAGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCATACGTGATCTAACTTCCTACACTAAAGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATCCTCTCCTTTGGCATCCGAAATGCTAAAAGTTCTGGTTGATGAGAATGAATCTAAAGCAGACATTTGGATACATAAAGAGCTAATTCAAGTAGACTGCAGAGAGAATGGAGAAGTGCTGTCTGTCATTTGCTCTAAGGATAAAATATTTTCAGGTCATACAGATGGCAGTATTAAGGTATGGACATTAAAGAATGGCTCATTCCATCTGTTGCAAGAGATCCAAGAACATTCGAAGGCTGTGACAAACTTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGACCGAACTACAAAGGTCTGGTCTATTGGAGGGGCTGCAGTACATTGTTTACAGGTGCATGATATGAAGGACCAAATTCATAATTTAGTTGTAACCGATAGCATAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCACTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAATGCTTGGCTCATGCTAATGGGAGATGGTACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGTACAGTCAATACTATTCAAAGTGGTTCTAAAAAATTACTTGGGAAAGCATACCCTATTCATGCACTACAAATTCATGGTGAACTTATATACGCAGCTGGCTCTTCCTTGGATGGATCTGCTGTAAAGATATGGAACAATTCCAATCACAGTATGGTTGGATCACTTCAAACTGGATCGGAAGTACGAGCTATGGCAGTGAGCTCAGAATTAATTTATTTGGGGTGCAAAGGAGGTGTTGTAGAAATTTGGGATAAGAAGAAACACGGAAGAGTTAACACGTTACAAGTGGGTACGCAGTGTAGGGTTACTTGCATGGCTCTAGACGGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTACATGATTTCCCTTTCCTACAATATAAGGTGTTCATGTTCCATAGGTAGCCATGTCCACACCTATCATAGTGTGTGCTGTGCGGGTCGACAAGCTTTTCAGTGCCGAAACTGA 2967 0.421 MTDYDNPPPGSGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKERNPNSVPPPCESPYEDTEAVVKTTIPSTSPNSVITQATFDGMISELRHAINNLYMSEILEESEMAVLQIEKLWRGVNLGVDIHSMLSKPPIINGFVEILLNSVEPQVLQAAVFLLAEMGSRDNAVIQTLTRVDTDVECIMALFKQGLTEAVVLLYLLNPSTVTLTEMAIVESLIRVFDRKEEDLVKMCLKPKTAAVLLLAQIIGSNEEMIASLVVKALFSEKAIGTIVSSLGAEWAEERIAAVEILLRCMEEDGTCRNIIADKAELSPILESFIGATDGERFKIVKFFSELIKLNRRTFNEQILHIIKEEGHFSTMHTLLIHLQTALQDECPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPATQLAAADTIMSLQGRFNFTGKPLTREVLLKRAGIDKSSRSLVQVDKINNFCPDQQVPEEEKAADDWERKIASVLVSHEFGILFEALADGMKSRYPELRSACFISATWLTYMLTILPDTGIQGAARVCLLKQFITKLNSARDVEDRILSMLALNSFLHFSDGIRDLTSYTKDILKGLRELKRSSPLASEMLKVLVDENESKADIWIHKELIQVDCRENGEVLSVICSKDKIFSGHTDGSIKVWTLKNGSFHLLQEIQEHSKAVTNLVISESGDRLYSGSLDRTTKVWSIGGAAVHCLQVHDMKDQIHNLVVTDSIACFIPQGTGVKVHSLNGESKLLNSNKYVKCLAHANGRWYCGCHDSSVQEIHLATGTVNTIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNHSMVGSLQTGSEVRAMAVSSELIYLGCKGGVVEIWDKKKHGRVNTLQVGTQCRVTCMALDGNEEILVIGTSDGQIQAYMISLSYNIRCSCSIGSHVHTYHSVCCAGRQAFQCRN. 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06884 988 Gene3D - 161 471 IPR011989 -
Seca11g06884 988 SUPERFAMILY WD40 repeat-like 683 958 IPR036322 GO:0005515
Seca11g06884 988 SUPERFAMILY ARM repeat 174 635 IPR016024 -
Seca11g06884 988 SUPERFAMILY RING/U-box 13 93 - -
Seca11g06884 988 CDD RING-Ubox_PUB 17 69 IPR045210 -
Seca11g06884 988 ProSiteProfiles Trp-Asp (WD) repeats profile. 712 745 IPR001680 GO:0005515
Seca11g06884 988 SMART Ubox_2 19 83 IPR003613 GO:0004842|GO:0016567
Seca11g06884 988 ProSiteProfiles U-box domain profile. 15 90 IPR003613 GO:0004842|GO:0016567
Seca11g06884 988 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 712 745 - -
Seca11g06884 988 Pfam U-box domain 17 87 IPR003613 GO:0004842|GO:0016567
Seca11g06884 988 Gene3D - 772 986 IPR015943 GO:0005515
Seca11g06884 988 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 954 - -
Seca11g06884 988 SMART WD40_4 663 700 IPR001680 GO:0005515
Seca11g06884 988 SMART WD40_4 705 744 IPR001680 GO:0005515
Seca11g06884 988 SMART WD40_4 835 871 IPR001680 GO:0005515
Seca11g06884 988 SMART WD40_4 874 910 IPR001680 GO:0005515
Seca11g06884 988 SMART WD40_4 913 953 IPR001680 GO:0005515
Seca11g06884 988 Pfam WD domain, G-beta repeat 709 744 IPR001680 GO:0005515
Seca11g06884 988 Gene3D - 659 771 IPR015943 GO:0005515
Seca11g06884 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 91 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06884 Seca-Chr11 169150967 169157578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06884 11 83 U-box Gene Family AT1G23030 53.425 1.12e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06884 - - gmx:100808867 1610.89