Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06880 ATGTCTGTGCCATTGGAACACGGGTATGGTGGCTTGCCAGAGGTTCCTTCAATGGAAGGCTCTAACAAGTTTACACAGAGGACAGGCATTGGGTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTGCCAGGGTCTGAGTCACCAGAGAGGGATTGTGTGGAGGACAAGAATGGATTCTCAGCCCCACTAGGCATGCTCAAGAGTTTGGTGTCTGGGGCCAAGAGGGGTTTCTCGGATACCATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGTAAAGATGGAAGCTTGTTCTCTCCCAGGGGTAGTAGTGCTGCCAACTCTGTCGCTCTCGCTGCGCCTGACTGCACCAACCAACAAACGCCTTTGGCTGCCAAAGAAAGCGTTCCACAGTCTCCAAAGCCATTGCATGAGAAGAAACCCCAGATTTCTGCTCCTGCTGCAAAGGCGCAAGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGAAAGGTGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTAGCACTTACAGGGAACTTTCTTCAGCACTTGAGAAGATGTTTAGTTGTTTTACCATCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAACTGAGAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCCTGGGAGATGTTCATTGACTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTAAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 942 0.4798 MSVPLEHGYGGLPEVPSMEGSNKFTQRTGIGLNLKATELRLGLPGSESPERDCVEDKNGFSAPLGMLKSLVSGAKRGFSDTIDGGSGKWVLSGNGGSEVGLGKDGSLFSPRGSSAANSVALAAPDCTNQQTPLAAKESVPQSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMATQPQKNDADAEAKSGCLYVKVSMKGAPYLRKVDLNSFSTYRELSSALEKMFSCFTISQCGSYGVSSRENLTESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSKAIGLAPRAMEKCKSRN. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06880 313 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g06880 313 MobiDBLite consensus disorder prediction 131 159 - -
Seca11g06880 313 Gene3D - 187 306 - -
Seca11g06880 313 ProSiteProfiles PB1 domain profile. 193 295 IPR000270 GO:0005515
Seca11g06880 313 FunFam Auxin-responsive protein 188 305 - -
Seca11g06880 313 SUPERFAMILY CAD & PB1 domains 190 294 - -
Seca11g06880 313 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 300 IPR003311 GO:0005634|GO:0006355
Seca11g06880 313 Pfam AUX/IAA family 37 304 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06880 Seca-Chr11 169083448 169086860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06880 196 303 B3 DNA Binding Superfamily AT4G23980 29.630 8.58e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca11g06880 AUX_IAA 4.6e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06880 K14484 - gmx:100803754 485.337