Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06876 ATGGAGAGTTTTAGAATTTTGGATTTTGTCACATATATTTATAGGGAGGTAGAGGGTGTAGGAGGTTGGAGAGTTTTAGAATTTTGGATTTTGTCACATATATTTAATTATTGTGATGCAGGTGGCATTCCGAGCATAAAATGGTCTGGCATAGACGGGGAGGATAATGTGCTTGTTCTTGATTTGCTGGGGCCCAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCCTTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACATAGGGATATCAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATCGGGATCCCACAACCAATCGACACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTATTTCCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAACAGAAGTATGATAAAATTTGTCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCCTTGACATTTGATCAGCGACCTGACTATGGATTCTTGAAGCGCCTGTTTCGGGACCTGTTTGCTCGAGAAGGTTATGAATTTGATTATGTTTTTGATTGGACCATTTTAAAGTATCAGCAGTCACAAAAGAATATAGTGCAGCCTCCCTTATCTCCAGTTCCTGGAGCAAGTAACAGTCGTGCAATTCCGATGGATGTTGACAACCATCAAGGGCATGTCAAAGAGCGCATTAGATCTGGCAATACTACTGGTGGTGGTGTTAAAATTCAGTTTAAATCACCAGTTGGTAAAAATTTGAGTTCTGGAAGTCCTCTTGACAAAAATAATTTTGGAGAAACAAATAAGCCCTCTACTTCATACTCTCCTGCTGGTACTTCAAAAAGGAACTCCTTGAGGCCTTCCTTGTCTGCTGAAGCTTCCAACCCTGGACATGGCCAAGGCAGTAAAGTTGGCCCTTCAAGTAGCTGGATGTCATCCCTGCAACACATGTCTTCTGCCAAATGA 1209 0.4103 MESFRILDFVTYIYREVEGVGGWRVLEFWILSHIFNYCDAGGIPSIKWSGIDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDPTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQSQKNIVQPPLSPVPGASNSRAIPMDVDNHQGHVKERIRSGNTTGGGVKIQFKSPVGKNLSSGSPLDKNNFGETNKPSTSYSPAGTSKRNSLRPSLSAEASNPGHGQGSKVGPSSSWMSSLQHMSSAK. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06876 402 PANTHER CASEIN KINASE-RELATED 27 348 - -
Seca11g06876 402 FunFam CK1 family protein kinase 30 295 - -
Seca11g06876 402 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06876 402 MobiDBLite consensus disorder prediction 311 402 - -
Seca11g06876 402 SMART serkin_6 12 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06876 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Seca11g06876 402 MobiDBLite consensus disorder prediction 318 402 - -
Seca11g06876 402 Pfam Protein kinase domain 59 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06876 402 Gene3D Transferase(Phosphotransferase) domain 1 24 303 - -
Seca11g06876 402 SUPERFAMILY Protein kinase-like (PK-like) 33 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06876 Seca-Chr11 169035235 169039944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06876 69 245 MAP Kinase Kinase Kinase AT1G62400 28.729 1.11e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca11g06876 Pkinase 5.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06876 K08960 - gmx:100779936 676.396