Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06867 ATGGGTGAGCTACCTAGCTCTGAGATAGACACTACCATTACCCTTACCATTACCACCACTACTAATAAAACTCCTAATCCTAAACCTTCCTCTTCAGAGCCCAACTTACCCGACCCGGATGAAAAAAGGCCCAAGCGGCCCAGAGATAGTAACAGCAAGCACCCCGTTTACAGAGGGGTTCGAATGCGGGCCTGGGGCAAGTGGGTATCCGAAATCCGCGAGCCCCGCAAGAAGAACCGAATCTGGCTCGGTACCTTCGCTACGCCGGAGATGGCAGCGCGTGCTCATGACGTGGCGGCGCTCGCCATTAAGGGAAACTCCGCCATCCTCAACTTCCCTGAAATCGCCGCTTCAATGCCCCGACCCGTCTCCAACTCGCCACGCGATGTTCAAGCTGCTGCCGCTAAAGCTGCTGCCATGACGTCGCATCTGTCTTCTTCTTCTTCGTCTTCTTCATTATCGTCATCGTCGCTGTCGCAGTCTTCGTCTTCTTCATCGTTGGCGGCGTCATCGTCTGGTGACCCGTCGACGCCGGAGGAGCTGGGTGAGATAGTGGAACTGCCAGCTTTGGGAACGAGTTTTGAAATACCCGACCCGAGTAGCGAGTTCGTGTTTTCCGACCCGGTGGATGGGTGGCCTTATTCTCACCCTTGGTATCATAGCATTTATGATGAGAGGGATTGTGAAGGGTATTTTATTGGGGATCAGATTTCGATGCAAGACTCTGAAACTGAAAGTGTGATTCTTTGTGGCTTTGAGGGTTCATTGTGGCAGCATTAA 780 0.5282 MGELPSSEIDTTITLTITTTTNKTPNPKPSSSEPNLPDPDEKRPKRPRDSNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSAILNFPEIAASMPRPVSNSPRDVQAAAAKAAAMTSHLSSSSSSSSLSSSSLSQSSSSSSLAASSSGDPSTPEELGEIVELPALGTSFEIPDPSSEFVFSDPVDGWPYSHPWYHSIYDERDCEGYFIGDQISMQDSETESVILCGFEGSLWQH. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06867 259 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Seca11g06867 259 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Seca11g06867 259 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Seca11g06867 259 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Seca11g06867 259 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Seca11g06867 259 MobiDBLite consensus disorder prediction 161 180 - -
Seca11g06867 259 MobiDBLite consensus disorder prediction 7 29 - -
Seca11g06867 259 MobiDBLite consensus disorder prediction 161 177 - -
Seca11g06867 259 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Seca11g06867 259 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Seca11g06867 259 MobiDBLite consensus disorder prediction 35 56 - -
Seca11g06867 259 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Seca11g06867 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 193 - -
Seca11g06867 259 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Seca11g06867 259 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06867 Seca-Chr11 168943044 168943844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06867 41 224 AP2-EREBP Transcription Factor Family AT5G11590 64.516 1.94e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca11g06867 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06867 K09286 - gmx:100778201 312.768