Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06857 ATGGTGGTGCCGCTGTCGGTGCCAACGTCCATAGATTTGGAAATCTTCGATCTGGACGAGGCTCTTGCGGTGGTCGGAGAATCACGCTGCCTGTTTGGGGCGTGGAAGACCTTTGTCTCGAACTTGCCGGCGGTTGTGGAGGTCGCTGAGGACGATGTTTGCTCCGTTTGTATGGAAGGCTTTGATCGACACAACAAGTCAGGTGACGGAAACAAACGAGTGCCGTGTGGACACGTGTACCATTCAAACTGCATCACCATGTGGCTCCAGCGCTGCAATTCTTGTCCTCTTTGCCGCCGCCATATCTCCCTTCACTTCTAA 321 0.5389 MVVPLSVPTSIDLEIFDLDEALAVVGESRCLFGAWKTFVSNLPAVVEVAEDDVCSVCMEGFDRHNKSGDGNKRVPCGHVYHSNCITMWLQRCNSCPLCRRHISLHF. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06857 106 Pfam Ring finger domain 53 99 IPR001841 -
Seca11g06857 106 SMART ring_2 54 98 IPR001841 -
Seca11g06857 106 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 36 101 - -
Seca11g06857 106 ProSiteProfiles Zinc finger RING-type profile. 54 99 IPR001841 -
Seca11g06857 106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 104 IPR013083 -
Seca11g06857 106 SUPERFAMILY RING/U-box 46 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06857 Seca-Chr11 168857672 168857992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06857 53 99 C3H Transcription Factor Family AT3G60080 51.064 1.27e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06857 K22378 - gmx:102669154 145.976