Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06847 ATGGGGAGAGCCACTAGGTGGTTGAAGGGCTTGTTTGGGATAAAGAAAGACAGAGAACACAAAGAAAATTCAAATTCAGGCACCAAATGGTCTCCTCCTGTTCATTCAGAGAGAGATTCAAGAGGCTTGTGTCATAATCCAGCTACCATTCCACCCAACATTTCACCAGCAGAGGCTGCTTGGTTACAATCCTTCTACTCAGAAACTGAGAAGGAGCAGAACAAGCATGCCATTGCAGTAGCTGCTGCCACAGCAGCTGCAGCAGATGCTGCCGTTGCTGCTGCTCAAGCTGCTGTGGCAGTTGTTAGGCTAACCAGCCAAGGAAGAGACACCATGTTTGGTGGTGGTGGTGGTGGACATCACAGGTTGGCTGCTGTCAAGATTCAAACTGTATTTAGGGGATATTTGGCAAGGAAGGCACTGAGAGCCTTAAAAGGATTGGTCAAATTACAAGCTCTTGTGAGAGGGTACTTGATAAGGAAGCAAGCAACAGCAACCCTGCATAGTATGCAGGCTCTTATTAGAGCTCAAGCAACAGTAAGGTCTCACAAATCTCGCGGACTCATGAACACAAAAAATGAAGCATATAGGCTTCAAACACAAGCACGGAGATCCATGGAGAGGTTTGATGACAATAGAAGTGAATACACAGCTCCCATCCACAGCAGAAGGCTATCATCTTCTTTTGATGCCTCATTGAATAACACTAACAGTGTTGATGGAAGCCCAAAAATAGTGGAAGTGGACACTGGAAGGCCAAAGTCAAGGTCTCACAGGAGTAACACATCAATGTCAGATTTTGGTGATGACCCATCATTTCAACCACTTCCCTCTCCCATCCCAATCCAATGTCGCACACCTGCTCATTTATCCATACCAGATCACAGGAATTTCCATGAGTCAGATTGGGGCTTAACAGGGGAAGAGTACAGATTCTCCACAGCACAAAGCACACCACGCTTCACAAGCTCTTGTAGTTGTGGGTCTGTTGCTCCTGTCACACCTAAAACTGTTTGTACTGATAATAACTTCTTCCTTGCACAATATGGAAATTTCCCAAATTACATGGCCAATACTCAATCCTTCAAAGCTAAGTTAAGGTCTCATAGTGCTCCAAAGCAACGGCCAGAACCAGGTCCAAAGAAGAGGCTTTCCCTTAATGAGATGATGGAATCTAGAAGTAGTTTGAGTGGGGTTCGAATGCAGAGGTCTTGCTCACAGATTCAAGAAGCTATTAATTTCAAGAATGCTGTGATGAGTAAGCTTGAGAAGTCCACAGAATTTGGTAGAGAGACAGAGAGGAACTTCTCCTACCAGAGGAGGTGGTGA 1329 0.4522 MGRATRWLKGLFGIKKDREHKENSNSGTKWSPPVHSERDSRGLCHNPATIPPNISPAEAAWLQSFYSETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRDTMFGGGGGGHHRLAAVKIQTVFRGYLARKALRALKGLVKLQALVRGYLIRKQATATLHSMQALIRAQATVRSHKSRGLMNTKNEAYRLQTQARRSMERFDDNRSEYTAPIHSRRLSSSFDASLNNTNSVDGSPKIVEVDTGRPKSRSHRSNTSMSDFGDDPSFQPLPSPIPIQCRTPAHLSIPDHRNFHESDWGLTGEEYRFSTAQSTPRFTSSCSCGSVAPVTPKTVCTDNNFFLAQYGNFPNYMANTQSFKAKLRSHSAPKQRPEPGPKKRLSLNEMMESRSSLSGVRMQRSCSQIQEAINFKNAVMSKLEKSTEFGRETERNFSYQRRW. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06847 442 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Seca11g06847 442 SMART iq_5 120 142 IPR000048 GO:0005515
Seca11g06847 442 SMART iq_5 143 164 IPR000048 GO:0005515
Seca11g06847 442 MobiDBLite consensus disorder prediction 229 272 - -
Seca11g06847 442 Pfam IQ calmodulin-binding motif 124 142 IPR000048 GO:0005515
Seca11g06847 442 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Seca11g06847 442 MobiDBLite consensus disorder prediction 18 41 - -
Seca11g06847 442 Gene3D - 119 172 - -
Seca11g06847 442 MobiDBLite consensus disorder prediction 364 383 - -
Seca11g06847 442 Pfam Protein of unknown function (DUF4005) 318 399 IPR025064 -
Seca11g06847 442 MobiDBLite consensus disorder prediction 229 243 - -
Seca11g06847 442 PANTHER IQ-DOMAIN 5-RELATED 1 391 - -
Seca11g06847 442 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06847 Seca-Chr11 168774626 168777150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06847 1 401 IQD Protein Family AT3G16490 52.580 1.30e-96 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06847 - - aprc:113866809 640.958