Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06846 ATGGCACTTGAACTCCCAAACTACTTATTCTCTCTGAGAATGTCAAATTTACATTCCATTTTCTATGTTTTAGTAGCTCTTCTTATTCTGCAAAATCCCAATGTAGCACAATGCCATACCAAGGGAATTCGACCAAGGCATTCTGTATGGACTGGACTATCAATGAATATGACCAGAATCCAAAACTCAGAACAACAGTTCATGAAATGGGTGAGATTTGTTGGTGGCCTCAGACACTCTATCTTCAGAACAGCCAAAAATAAGCTCTTTCCTTCATACACATTGCATGTTTCTAAGCATGGAGGTAAAGGGGGTTTCTCATCAATTCAAGAAGCCATTGATTCCCTTCCATTCATCAATCTAGTGAGAGTGGTCATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTGAGATTCCTCCTTTTAAATCCTTCATAACCATTCAAGGAGCAGGAGCAGATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACTCTTGGGCCAAAAGGCCAGCCACTGGGAACCTATGGTTCTGCAACTTTTGCTGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTGCCCCAGTTCCACGACCAGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATCTCAGCAGATACAGCAATATTCCTTGGCTGCAAATTCTTTGGAGCACAGGACACGCTCTATGATCATGTGGGTAGGCATTACTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTCGGCAATGGTCTCTCTCTATTTGAGGGGTGTCACGTGCATGCCATAGCACAAAATACAGGGGCCCTAACAGCCCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTCGTTCACTGTAAGGTCACGGGCTCAGGAGCACTATACCTTGGAAGGGCCTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGCTGGTATAATTGGGGCGATCCCAACCGTGAAATGTAA 1038 0.4345 MALELPNYLFSLRMSNLHSIFYVLVALLILQNPNVAQCHTKGIRPRHSVWTGLSMNMTRIQNSEQQFMKWVRFVGGLRHSIFRTAKNKLFPSYTLHVSKHGGKGGFSSIQEAIDSLPFINLVRVVIKVHAGVYTEKVEIPPFKSFITIQGAGADKTIVQWGDTAQTLGPKGQPLGTYGSATFAVNSPYFIAKNITFKNTAPVPRPGAVGKQAVALRISADTAIFLGCKFFGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQNTGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREM. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06846 345 SUPERFAMILY Pectin lyase-like 90 343 IPR011050 -
Seca11g06846 345 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
Seca11g06846 345 Gene3D - 55 345 IPR012334 -
Seca11g06846 345 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 88 344 - -
Seca11g06846 345 Pfam Pectinesterase 100 339 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06846 Seca-Chr11 168769514 168772525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06846 7 338 Carbohydrate Esterase AT5G47500 43.675 1.12e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06846 K01051 - gmx:100802832 593.964