Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06843 ATGTCGTGGCAAACCTACGTCGATGACCACCTTCTCTGCGACATCGAAGGAAATCACCTGACTTCTGCTGCTATCATCGGCCAAGACGGCAGCGTTTGGGCTCAGAGTTCCAATTTCCCTCAGTTCAAGCCTGAGGAAATAACTGCCATCATGAATGACTTCAATGAACCTGGATCGCTTGCTCCAACTGGATTGTATCTTGGTGGCACAAAATATATGGTGATCCAAGGTGAGCCGGGAGCTGTCATTCGAGGGAAGAAGGAAAACTTCCCCGTGACTTCCCCAAGTGTCCAGATTCATTGA 303 0.4917 MSWQTYVDDHLLCDIEGNHLTSAAIIGQDGSVWAQSSNFPQFKPEEITAIMNDFNEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKENFPVTSPSVQIH. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06843 100 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Seca11g06843 100 PANTHER PROFILIN 1 92 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Seca11g06843 100 CDD PROF 2 93 IPR005455 GO:0003779
Seca11g06843 100 SMART prof_2 1 99 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Seca11g06843 100 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Seca11g06843 100 SUPERFAMILY Profilin (actin-binding protein) 2 92 IPR036140 -
Seca11g06843 100 Gene3D Dynein light chain 2a, cytoplasmic 1 95 - -
Seca11g06843 100 Pfam Profilin 1 89 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06843 Seca-Chr11 168722274 168732358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06843 1 87 Cytoskeleton Gene Families AT5G56600 79.310 1.54e-50 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06843 K05759 - rcu:8265128 177.178