Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06837 ATGGAGAAGAACTGGATTCTGACTTTTCTCCTCCTCTCCCTTCTCCTATTCCCAAATGCAGCAAGAGCTGCCATTAGTATAGGTGTTGGTGTTGGTGGTGGTGGTGGTGTAGGTGTTGGTGTTGGTTCTGGCAATGGTGGTGGGGTTAACAGCCCAGGGCCTTCTGGATCTTCAGTGAACAATGCTTTCACAGCTCTTCAGGCATGGAAATCTGCAATTACTGATGACCCACTGAAGATTTTAGATAATTGGGTTGGTTCTAATGTGTGTTCTTATAAAGGAGTGTTTTGTGATGGTTCTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCAAGGAACTCTTGTCAAAGAGCTATCTTTACTTGTTGATATGACTCTTCTCCACCTCAACAGTAACAGATTTTCTGGTACAGTTCCTGATACATTCAAAGACCTCACCTCTCTTGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTTCCCACAGTTACTTTATACATGCCAAGACTCATCTACCTTGACCTCAGATTCAACTCCTTCTCAGGGTCACTTCCTGAACAACTTTTCAATAAGAGACTGGATGCAATATTTCTCAACAACAATCAATTTGGAGGTGAAATTCCACAAAATTTGGGCAATTCCCCTGCCTCAGTCATAAATTTAGCTAACAATAAGTTCAGTGGAAACATCCCAGCAAGTTTGGGGTTCATGAGTTCTCAACTCAAGGAGATTCTCTTCCTTAATAACCAGCTAACAGGTTGTATCCCTGAAGGAGTTGGGATCTTCACTGAGATGCAAGTCCTTGATGTGAGCTTCAATTCACTGGAGGGTCATTTGCCAGACACAATATCTTGCTTGCAAGATATAGAGGTTCTCAATTTGGCACATAACAAGCTTTCTGGGGAATTATCTGACATGATCTGCTCTTTGAGAAGCCTAGTGAATCTAACTGTGGCTTACAATTTCTTTTCTGGTTTAAGCCAAGAATGCTCAAGGCTTTTCAATGTGGGTTTTGATTTCTCAGATAACTGCATTCCTGGAAGGAACATGCAGAGACCTCCACCAGAGTGCTCTGGGATCCCAGGTGTTAACTTGAATTGCCTAAGAATCCCTACTCCAAAACCTCTTGTTTGTGGTGCGCTGTTTGCAAGTACCTCTAAGCACACAAATCTACGTTCATCATCTCCTTGA 1203 0.4256 MEKNWILTFLLLSLLLFPNAARAAISIGVGVGGGGGVGVGVGSGNGGGVNSPGPSGSSVNNAFTALQAWKSAITDDPLKILDNWVGSNVCSYKGVFCDGSVVAGIDLNHANLQGTLVKELSLLVDMTLLHLNSNRFSGTVPDTFKDLTSLEELDLSNNQLSGPFPTVTLYMPRLIYLDLRFNSFSGSLPEQLFNKRLDAIFLNNNQFGGEIPQNLGNSPASVINLANNKFSGNIPASLGFMSSQLKEILFLNNQLTGCIPEGVGIFTEMQVLDVSFNSLEGHLPDTISCLQDIEVLNLAHNKLSGELSDMICSLRSLVNLTVAYNFFSGLSQECSRLFNVGFDFSDNCIPGRNMQRPPPECSGIPGVNLNCLRIPTPKPLVCGALFASTSKHTNLRSSSP. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06837 400 FunFam Leucine-rich repeat receptor protein kinase EMS1 235 334 - -
Seca11g06837 400 Gene3D Ribonuclease Inhibitor 221 369 IPR032675 -
Seca11g06837 400 Gene3D Ribonuclease Inhibitor 170 220 IPR032675 -
Seca11g06837 400 Gene3D Ribonuclease Inhibitor 61 169 IPR032675 -
Seca11g06837 400 PRINTS Leucine-rich repeat signature 150 163 - -
Seca11g06837 400 PRINTS Leucine-rich repeat signature 290 303 - -
Seca11g06837 400 FunFam Leucine-rich repeat extensin-like protein 1 63 217 - -
Seca11g06837 400 Pfam Leucine rich repeat 127 183 IPR001611 GO:0005515
Seca11g06837 400 SMART LRR_typ_2 171 195 IPR003591 -
Seca11g06837 400 SMART LRR_typ_2 266 290 IPR003591 -
Seca11g06837 400 SMART LRR_typ_2 314 337 IPR003591 -
Seca11g06837 400 SMART LRR_typ_2 147 170 IPR003591 -
Seca11g06837 400 SMART LRR_typ_2 123 146 IPR003591 -
Seca11g06837 400 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 55 376 - -
Seca11g06837 400 Pfam Leucine rich repeat N-terminal domain 60 98 IPR013210 -
Seca11g06837 400 SUPERFAMILY L domain-like 61 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06837 Seca-Chr11 168691552 168692754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06837 59 364 Leucine-rich Repeat extension Gene Families AT3G24480 52.396 1.70e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06837 - - gmx:100786358 610.912