Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06836 ATGAAGATCGAGGAATTGGAGGATTCAGAGTGTAGTAGGGATGAACAGGAGAAATACGAGAGGCAAATTGTGATGGTTGATGCAAAGAGAGCGTTGGTCGGAGCAGGTGCCCGAATTCTGTTTTATCCGACGCTTTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCCGGTGGTGGGATCAAATTGATGAGTTTTTATTGCTCGGCGCAGTCCCGTTCCCCAAAGATGTTCCTCACTTGAAGGAGCTTGGTGTGGGTGGTGTGATTACTCTGAATGAACCTTATGAAACTTTGGTGCCGTCATCATTATATCATGCTCATGGGATTGATCATTTGGTAATTCCCACAAGGGATTATCTCTTTGCCCCCTCATCTGTGGATATCAGCCGGGCAGTGCAGTTCATTCATCAGAATGCAACTTGCGGAAAAACTACTTATGTTCACTGTAAAGCTGGGCGGGGAAGGAGTACTACAATTGTGCTTTGTTATCTGGTGGAATACAAACACATGACACCTGCTGCTGCCCTGGAATATGTGAGGTCTCGAAGACCTAGAGTGCTACTAGCACCATCACAGTGGAAGGCTGTTCAAGACTATAACAAGCGAAAACCTTGTCCTTTAGCATGCTCTCCCTCTGGGGATGAAGTTCTTATAACCAAAGCTGATCTTGAAGGTTATCATAGCACAAATGATGCTGGTATGGAGCTGGCCATTGTTCCTAAAGTGCCAAAGACTAAGCCCATGATAGCAAGACTATCTTGCCTGTTTGCATCCTTAAAAGTACCTAGTGGTAGTAGTGTACCAATGACGAGGCGGCTGCCAGTTTCTGAGTCACGTGCCTGCTAA 852 0.4554 MKIEELEDSECSRDEQEKYERQIVMVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKELGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSSVDISRAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPAAALEYVRSRRPRVLLAPSQWKAVQDYNKRKPCPLACSPSGDEVLITKADLEGYHSTNDAGMELAIVPKVPKTKPMIARLSCLFASLKVPSGSSVPMTRRLPVSESRAC. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06836 283 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Seca11g06836 283 Gene3D Protein tyrosine phosphatase superfamily 60 205 IPR029021 -
Seca11g06836 283 CDD PTPMT1 60 204 IPR044596 GO:0004721
Seca11g06836 283 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Seca11g06836 283 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 260 - -
Seca11g06836 283 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Seca11g06836 283 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Seca11g06836 283 FunFam Dual specificity phosphatase domain protein 60 207 - -
Seca11g06836 283 Pfam Dual specificity phosphatase, catalytic domain 82 203 IPR000340 GO:0008138|GO:0016311
Seca11g06836 283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 203 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06836 Seca-Chr11 168675206 168678861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06836 22 262 Protein tyrosine phosphatase (PTP) family AT2G35680 54.448 3.86e-102 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06836 - - gmx:100817410 533.102