Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06835 ATGAGCAACTTGAGTACTTGTGTTGTAAGGAGCTCTGATCTGATAGATTCAAAGCTGGAAGAGCATCAGTTATGTGGATCCAAACAGTGTCCTAGTTGTGGACACAAGTTTGAAGGGAAGCCGAATGGAACCAATCAACAGGATTGGCTAGGTCTACCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAGTAGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCTTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGATTGAGCAAACACTTTTTCCATAGACCTTCAAAGGCATACACAACAGGGACAAGGAAGAGGAGAAAGATTCAAAATGAATGTGACTTGCAAGGAGGAGAAACCAGATGGCACAAGACTGGTAAGACAAGGCCAGTGATGGTGAATGGGAAACAAAAAGGGTGTAAGAAGATTCTTGTGCTGTACACCAATTTTGGAAAGAACAGAAAACCAGAGAAGACCAACTGGGTGATGCATCAATACCATCTTGGACAGCATGAAGAAGAGAAAGAAGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGGCAATGCAATTGGTCAGATCATAGAATAACTGGTGAAGGTGGAATTAGTGGAGACCAACCTAACAACATTAATGGCAGATCAAGAGACAGTTGTAGTTCTGCTCTAGTTGTTGGTGTCCCTCCAATCACAAGCTTCACCAATGCCTTGGATATTCAACACCTAAAATCAGATCATTTCAGCACCACCTTCATCCCATTCAGAAAAACCTTCGATGAGCAAGTTGGAATAGGAGAAGCTTCTAGAGGAAGAGAAGTGCAAGCATGTGAAGAAGAAGGGCATCAACAGGTTGCAACGACAGCGTTTCATATAAGTAGGCCTTCTCATGCGATCTCTCCACCGCCTCTCCATCACACATCCATCATCTTAGACGACAACTCTTACCATATAATGCTCCAAAATCAAAATTTCCACCAGCAACAAGCTGAACATCATAAACTTGGAGGAAGGTCTGCGTCGGGTTTGGAGGAACTCATAATGGGGTGCACTACTTCAACGGATCATATCAAAGAGGAGTCATCCATTAGAAATCCAGAAGAAGCTGCTGAATGGATGAAGTACTCATCTTACTGGCCAGATCATCATCATCATGAGTAA 1245 0.4265 MSNLSTCVVRSSDLIDSKLEEHQLCGSKQCPSCGHKFEGKPNGTNQQDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDHRITGEGGISGDQPNNINGRSRDSCSSALVVGVPPITSFTNALDIQHLKSDHFSTTFIPFRKTFDEQVGIGEASRGREVQACEEEGHQQVATTAFHISRPSHAISPPPLHHTSIILDDNSYHIMLQNQNFHQQQAEHHKLGGRSASGLEELIMGCTTSTDHIKEESSIRNPEEAAEWMKYSSYWPDHHHHE. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06835 414 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 351 IPR044799 GO:0003700
Seca11g06835 414 FunFam NAC domain-containing protein 73 61 217 - -
Seca11g06835 414 Gene3D NAC domain 61 217 IPR036093 GO:0003677|GO:0006355
Seca11g06835 414 ProSiteProfiles NAC domain profile. 52 213 IPR003441 GO:0003677|GO:0006355
Seca11g06835 414 Pfam No apical meristem (NAM) protein 53 194 IPR003441 GO:0003677|GO:0006355
Seca11g06835 414 SUPERFAMILY NAC domain 46 213 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06835 Seca-Chr11 168666936 168670046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06835 13 407 NAC Transcription Factor Family AT5G56620 53.103 2.36e-130 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g06835 NAM 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06835 - - gmx:100794811 648.662