Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06806 ATGGCTGCATCATCACTATCATTTCCTTTCCATTGTTCTCCTACCACCAATGCTCTCCGATCATCCCCAAAATCCACTTTTTTCACTCTCCGTCGCACTTGCGTGTCGTGCAGTGTCAGCGATGGTGCACACAGTCCCCTCCTCAAAGTCAATGACCTTAGGGCTAAAATCGTAGAATCAAACGTCGAGATTCTTCACGGTGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGAAAGAACGGTTCTGGAAAGAGCACTTTCGCCAAGGTTCTTGTTGGACATCCAGATTATGAAGTTACCGGAGGCAGCGTTGTCTTCAAAGGGGAAAATCTGCTTGAGATGGAACCGGAGGAAAGGTCACTTGCAGGTCTTTTCATGAGTTTCCAATCCCCTGTTGAGATTCCTGGTGTTTCTAATGATGAGTTTCTCGTTATGGCCTACAATGCTCGAAGAAAAAAGCTTGGTCTTCCTGAGCTTGGACCACTCGAGTGCTTTTCTTACCTTATGGAGAAGCTCCAACTTGTTAACATGAAGCCTGATTTTCTCAATAGGAATGTCAATGAAGGATTTAGTGGCGGTGAACGCAAACGCAATGAAATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGATGAAATTGATTCTGGATTGGATGTTGATGCGCTCAGGGATGTAGCCAATGCAGTCAATAAGATTCTGACCCCAAAGAATTCTCTGTTGACGATAACTCATTATCGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGATAAAGGGAAAATTGCAAGGACAGGCGATATATCTATGGTAGAAGCTATTGAGGCAGAGGGATATGAAACAGTCTCTGCTTTAACTTAA 891 0.4467 MAASSLSFPFHCSPTTNALRSSPKSTFFTLRRTCVSCSVSDGAHSPLLKVNDLRAKIVESNVEILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNKILTPKNSLLTITHYRRILDLLNPTHVHVMDKGKIARTGDISMVEAIEAEGYETVSALT. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06806 296 ProSitePatterns ABC transporters family signature. 194 208 IPR017871 GO:0005524|GO:0016887
Seca11g06806 296 NCBIfam Fe-S cluster assembly ATPase SufC 48 291 IPR010230 GO:0005524
Seca11g06806 296 SMART AAA_5 74 271 IPR003593 GO:0016887
Seca11g06806 296 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 36 293 IPR010230 GO:0005524
Seca11g06806 296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 279 IPR027417 -
Seca11g06806 296 Gene3D - 47 295 IPR027417 -
Seca11g06806 296 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 48 294 IPR003439 GO:0005524
Seca11g06806 296 Pfam ABC transporter 65 219 IPR003439 GO:0005524
Seca11g06806 296 CDD ABC_FeS_Assembly 48 289 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06806 Seca-Chr11 168343219 168347282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06806 61 276 Calmodulin-binding Proteins AT2G36910 23.581 2.19e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06806 K09013 - gmx:100811883 476.478