Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06805 ATGGAAGGCTATTACAGAACACGGAGAGAAAACGGAGTGACTGTGCCATCATGTTCTTCTTCGCGTGAGGAATTCCACTCTCGCGGTGGAAAAGGACTATTAGGAAAGGCTAATGCTCCTTCATCTTCGAGATACGATATGACTGTAATCGGGAATGGTAAGAAGAAGCAAAAACGTAAATGTCTACAGGAGTTGTTTACAGAAGACTTCATTGTTAGCAATGTGTTACGGAAGGATGGCCCTCCACTTGGTCGGGAATTTGATTCTCTTCCTTATGGTAAAGATTTTTTATATATCTTTGTACTCTCCTTTAATTTGTCTCAGGTCCTCTTTCCTCAGGTTTCTACGAGTGCAATTCACAGTCACCCTGATTGTAATATGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACTAATCCTGATGCTGGAGACCTTCCAATCGGTTTTGGTTTTGCTGACCAAGAAGTTCATCAAATCTCTAATTCTATAGCACAGAAACCAGTCCATGAGAACAACAGGTCACGGAAGACAGTTACCTTGAATGGAAAGCCAAAAAATAAAATGCAGAGTAAGAGAAATAAAGTACAGGATAAGAGGAAACTTTTCATGCAAAAAAGAGTGGGGGAGTTGAACCAATATGTGATTCAGGAGCAGTCACCAAAGGAAAAATGCGATCTTGCTTTAGATGGCGCAATACCAGAGGAGGGAGTTGATCGAATTTCAATGTTAATTGATGACGAAGAGCTAGAGTTGAGAGAGTTACAAGAAGGAACCAATCTGCTTGTGTGTTCAGATCATCTTGCTGCCAGTGGAATGCTTGGCTGCTCACTCTGTAAAGATGTGCTAGTTAAGTTCCCCCCAGAAACTGTCAAGATGAAAAAACCTATACGTTTGCAACCTTGGGACTCCTCTCCAGAACTTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTGTAGTTGTTGATATATGTCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCATGACAAGGACTCAATGTTACTAGGAAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTGACATCGAAGTTGAGCTTACGAATGGATTCTCACCTCATTTAAATAAGTCATGCAATTTTCTGGCCTTGCTTCACTCAGTTGAAAGTCGAGAATATTCCCTTGACTTCTGGAGAAGATCTCTAAATGCTCTTACATGGATTGAAATACTTCGTCAAGTACTGGTTGCTTCTGGATTTGGTTCAAAGCAAGGTGCCCTGCGAAGAGAGGCCCTTAGCAAGGAATTGAATCTTCTTGTCAACTATGGCTTATGCCCTGGCACCTTGAAGGGTGAGTTGTTTACAATCTTGTCAGAGCGAGGAAACAATGGATGCAAAGTATCTGACCTGGCAAAGTCAATGCAGATTGCTGAATTAAACCTGGTCAGCACAACAGAGGAACTGGAGTCTTTAATATGTTCAACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGATTGCGTATGAGCACTGTTATGAAGGACAATGATGAATTTCAGTCAGATATGGAGGATTATGGGAGTGTTGATGATGAACTTAACGACACTGATACGTGTAGCAGTGGAGATGATTTTGAAAGTGATTCAATAAACTCCAATATAAGAAAATTGAAGCGCGCAAACAGTCGGAAAATTAAAAATAATATCCTGAAAGTATACACTGAAATAGATGAGAGTCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAAAGTGAATATTCAGATTTGAACATTGAGGAAAAATTGAATGCATTGGTGGCTCTAACAGATCTTGTTTCATCTGGATCCAGCATCAGGATGAAGGATCGAATAAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCTGGAGCAAAAATAAAGAGATCAGTAGTAAAGAAGCCTGGACCATTTTGGAACCAGGTTGGGCAAATGCAATGTGTTACAGAAGTGCACTTGAATTCTCATTCCTGTCCAGTAGATTCTGCGTCATTAATCTCAAAATGCCATAGTCGTGAGGCATCCTTTGATAAAGCAAAAGGATCAACTGATTCACACCCCATTCAGTCAGTGTATTTGGGATCTGATCGTCGGTACAATAGATACTGGCTATTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCATTATGTGCCTTGTTGTCAGTTCTTGATGATAGAGGGAAACGGGAAGCTCTTCTTATTGAATCTTTGGAGAGGCGACAAACATCTCTATGCAGATCTATGTCCAGGATTAAGGTTAACAGTACTGGAATGGGGTGTATGTCACATTCTGATCAATCTGAGCTGGATTCTCCCATATCTGATATAGACAACCTAAACTTGGCTGAGACTGATAAAGACTCTTTGCAGTCAGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGCAGAGGAACAAATACAAAAGTGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGATGACAGCAACACATTTCCAAATCATAAAGTCTTAGCGTCACAGGTTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTCGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTCAAGCGGCTCAGACGCACTTCAACTTTAGTGGAGCTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATGAGGGCTGGTTATTCCAATGCAAATTTCCTGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCACACATCATCTGCCCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAAAAGCAGGGAATCGGTAAGCAGGGTCCTTGGTGA 3225 0.4096 MEGYYRTRRENGVTVPSCSSSREEFHSRGGKGLLGKANAPSSSRYDMTVIGNGKKKQKRKCLQELFTEDFIVSNVLRKDGPPLGREFDSLPYGKDFLYIFVLSFNLSQVLFPQVSTSAIHSHPDCNMKAPVKKHGIGKGLMTVWRATNPDAGDLPIGFGFADQEVHQISNSIAQKPVHENNRSRKTVTLNGKPKNKMQSKRNKVQDKRKLFMQKRVGELNQYVIQEQSPKEKCDLALDGAIPEEGVDRISMLIDDEELELRELQEGTNLLVCSDHLAASGMLGCSLCKDVLVKFPPETVKMKKPIRLQPWDSSPELVKKLFKVFHFIYTYAVVVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESREYSLDFWRRSLNALTWIEILRQVLVASGFGSKQGALRREALSKELNLLVNYGLCPGTLKGELFTILSERGNNGCKVSDLAKSMQIAELNLVSTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVMKDNDEFQSDMEDYGSVDDELNDTDTCSSGDDFESDSINSNIRKLKRANSRKIKNNILKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALVALTDLVSSGSSIRMKDRIKVTADCNSSIQLRGSGAKIKRSVVKKPGPFWNQVGQMQCVTEVHLNSHSCPVDSASLISKCHSREASFDKAKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRIKVNSTGMGCMSHSDQSELDSPISDIDNLNLAETDKDSLQSAGAVVIEAGKKAEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKDDSNTFPNHKVLASQVQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLADFVGAINEGWLFQCKFPDGVVEEIIASFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGIGKQGPW. 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06805 1074 Pfam DDT domain 315 370 IPR018501 -
Seca11g06805 1074 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 720 793 IPR028941 -
Seca11g06805 1074 Coils Coil 246 266 - -
Seca11g06805 1074 SMART testlast3 314 373 IPR018501 -
Seca11g06805 1074 MobiDBLite consensus disorder prediction 16 39 - -
Seca11g06805 1074 PANTHER HOMEOBOX PROTEIN SIX 205 1061 - -
Seca11g06805 1074 MobiDBLite consensus disorder prediction 179 204 - -
Seca11g06805 1074 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 595 634 IPR028942 -
Seca11g06805 1074 ProSiteProfiles DDT domain profile. 314 373 IPR018501 -
Seca11g06805 1074 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06805 Seca-Chr11 168331413 168341804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06805 252 1068 Homeobox Transcription Factor Family AT1G28420 26.606 3.48e-75 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Seca11g06805 WSD 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06805 - - gmx:100792062 1732.61