LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g06799	ATGTCAAGATCAATTATAGAGAAGAAGCTAGGTGCAGGACGTGTGGTGGCAGTGGCAATTGAAAACAACAAAACAAGCCAATATGCAGCAAAATGGGCAGTTGACAATCTTCTTCCTAAAGACCAACATCTCTTATTAATGCATGTTAGACAAAGAGCATCTTCCATTCCTACACCAACGGGAAACCATGTATCTGTTGATGTCAATGATGATGTGGCCAGAGCATACATGCAACAAATGGACAATGAATCCAGGGAGCTTTTTGCTTCATTTCGTGTCTTCTGCAATAGAAAGAGTATACAATGCAAAGAAATCTTGTTGGAGGACACGGATATATCAAAGGCAATAATGGAGAGTATTAACACATATTCCATTGAGCTTTTGGTACTGGGGGCACCATCAAGGAGTGGTCTTGTCAGAAGATTTAGGACAACAGATGTTCCAAGCGTTGTGTCTAAAGGGGCACCCCAATTCTGCACTGTGTACATTATTTCCAAAGGAAAAATCTCATCTGTGAGAACTGCTACTGCTCCACTACCTAAGCCTACACCCCGTAACAATACATTGCAGCCACAGCATTTCCAGAATCCTGAGAGAATGGATACACAACTAATACGCAATGCCCCACCTAGAAGATCAGCAGAGAGGCAAGCATACATTGCTCGCAAGCAAGTGGATGAAGAGGAAATCATATCACCATTCACAAGAGCTGGACCTGGAAGGCCAATCCTGAGATCCTATGAGTCCTCAATCCCTGACTCTGATATTTCATTTGTGAGCAGTGGAAGGCCAAGTATTGATAGGTTGTTCCCTTCAATGTATGATGATCTGGACTCTGGAATAGCCCCTCCTCGGCTTTCATCAGGCTCAGATTATGATGTCAGAAGCTTCGGTTCATCTTTCTCAGGTGCTAAGTCAATTGATCAGGGTGACTACTCATTCAGTTCACAAGACAGTGGGATGTCAATGTCATCATCAAGGTTATCAAATGGGGATGATGTGGAAGCTGAAATGAGGAGACTGAGGCTAGAACTGAAGCAAACAATGGAAATGTACAGTACAGCTTGCAAGGAAGCTTTGACAGCAAAGCAGAAGACAGTGGAACTTCAGCGTTGGAAACTAGAAGAACAAAGGAAATTTGAAGATGCACGATTAGCTGAAGAAACAGCATTGGCAATAGCTGAGAAGGAGAGAGCAAAATGTAAAGCAGCCATGGAGGCAGCAGAAGCATCTCGAAAATATGCAGAATTGGAAGCACATAAAAGAGTTCATGCAGAAATGAAATCCATGGGAGAATCTGAGCAGAAGAAGAAGGCATCAGCGGCAGATAGTATTTCATTTGGTCCTGCAAGGTACAGAAGATACAGTATTGAGGAAGTAGAAGAAGCAACAAATTTCTTTTCCAACTCTCTCAAGATAGGTGAAGGAGGTTATGGACCAGTCTATAGGGCTGAACTAGATCACACACCAGTTGCAATAAAAGTGTTGAAACCAGATGCAGCTCAAGGACGGTCACAGTTCCAGCAAGAGGTTGAAGTGCTAAGTTGCATAAGGCATCCAAACATGGTTCTCCTTCTTGGAGCATGCCCTGAGTATGGTTGCCTAGTGTATGAACACATGGCTAATGGAAGCTTGGATGATTGTCTCTTCCGGAGAAATAAAAACATACCAGTTCTTCCCTGGCAGTTTAGATTCCGAATTGCAGCAGAGATTGCCACTGGCCTCCTTTTCCTTCACCAGACAAAACCAGAACCATTGGTGCACCGTGACTTAAAACCTGGAAACATTTTGCTTGACCGGAACTTTGTGAGCAAGATCAGTGATGTGGGGTTGGCCAGGCTTGTCCCTCCTTCAGTTGCAGACACTGTGACACAGTACCGCATGACAGCAACTGCTGGAACATTCTGTTACATTGACCCTGAGTACCAGCAAACGGGCATGCTAGGAATCAAATCTGATATTTACTCACTGGGAATCATGCTTCTACAGATAATAACAGCCAAGTCACCAATGGGTTTGACTCACCATGTTTCAAGAGCTATTGAGAGGGGGACTTTTGATGAGATGCTTGATCCAGCTATTGAGGATTGGCCAGTTGAACATGCCTTGCATTTTGCCAAGATTTCTCTGCAATGTGCAGAAATGAGAAGAAAAGATAGACCTGATCTTGGGAAAGTTGTATTACCTGAGCTCAACAAACTCAGAGATTTTGCTGAAGAAAACATGCCAATGATGATGATGATGTTCGGTGGTGGTGGAGGATACACTCCAAGAAATAACATGAATTTCTCACGCTCCACATTTTCCTCCTCAGTTCAAGACTCTATGAGTGAATCCCAGTCACTGTCTGGAATGTCTGGATATGAAAGCCAATCAAGCACATCATCAATTGGAAAAATGTAG	2403	0.4336	MSRSIIEKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLMHVRQRASSIPTPTGNHVSVDVNDDVARAYMQQMDNESRELFASFRVFCNRKSIQCKEILLEDTDISKAIMESINTYSIELLVLGAPSRSGLVRRFRTTDVPSVVSKGAPQFCTVYIISKGKISSVRTATAPLPKPTPRNNTLQPQHFQNPERMDTQLIRNAPPRRSAERQAYIARKQVDEEEIISPFTRAGPGRPILRSYESSIPDSDISFVSSGRPSIDRLFPSMYDDLDSGIAPPRLSSGSDYDVRSFGSSFSGAKSIDQGDYSFSSQDSGMSMSSSRLSNGDDVEAEMRRLRLELKQTMEMYSTACKEALTAKQKTVELQRWKLEEQRKFEDARLAEETALAIAEKERAKCKAAMEAAEASRKYAELEAHKRVHAEMKSMGESEQKKKASAADSISFGPARYRRYSIEEVEEATNFFSNSLKIGEGGYGPVYRAELDHTPVAIKVLKPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFRRNKNIPVLPWQFRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTATAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQIITAKSPMGLTHHVSRAIERGTFDEMLDPAIEDWPVEHALHFAKISLQCAEMRRKDRPDLGKVVLPELNKLRDFAEENMPMMMMMFGGGGGYTPRNNMNFSRSTFSSSVQDSMSESQSLSGMSGYESQSSTSSIGKM.	801

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g06799	800	Gene3D	HUPs	14	164	IPR014729	-
	Seca11g06799	800	Coils	Coil	391	411	-	-
	Seca11g06799	800	CDD	STK_N	15	167	-	-
	Seca11g06799	800	MobiDBLite	consensus disorder prediction	312	331	-	-
	Seca11g06799	800	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	586	598	IPR008271	GO:0004672\|GO:0006468
	Seca11g06799	800	Pfam	Universal stress protein family	14	153	IPR006016	-
	Seca11g06799	800	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	440	539	-	-
	Seca11g06799	800	SMART	serkin_6	467	728	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06799	800	Gene3D	Phosphorylase Kinase; domain 1	448	539	-	-
	Seca11g06799	800	ProSiteProfiles	Protein kinase domain profile.	467	731	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g06799	800	SUPERFAMILY	Protein kinase-like (PK-like)	447	727	IPR011009	-
	Seca11g06799	800	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	16	144	-	-
	Seca11g06799	800	MobiDBLite	consensus disorder prediction	766	800	-	-
	Seca11g06799	800	Pfam	Protein tyrosine and serine/threonine kinase	472	726	IPR001245	GO:0004672\|GO:0006468
	Seca11g06799	800	FunFam	U-box domain-containing protein 51	540	741	-	-
	Seca11g06799	800	Gene3D	Transferase(Phosphotransferase) domain 1	540	746	-	-
	Seca11g06799	800	PANTHER	OS02G0152300 PROTEIN	15	747	-	-
	Seca11g06799	800	Coils	Coil	331	351	-	-
	Seca11g06799	800	MobiDBLite	consensus disorder prediction	312	333	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g06799	Seca-Chr11	168286844	168291921	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g06799	7	760	Receptor kinase-like Gene Family	AT1G78940	54.264	0.0	752

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Seca11g06799		PK_Tyr_Ser-Thr	7.4e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g06799	-		-	gmx:100803837	1201.42