Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06784 ATGGCAGAGGAGTTCTCATTCCACACTCACAAACTGCACCTCTTACATTGGCTATGCTTATTTTATTTCTCACTAACACTTCTCACTGTGACAGGATCACCAACGACCATGTCCATGGATCACGTGAAGCCCTCAACCCCTCTCGTTTCCTTTCTCGAACGCCTCCAAGAAACCGCATTCAAAACCTTCGGCAACTCCAACTTCGACCCCAAAACCTACGTCGACTTGCCCCTCAAGTTCAGCCTCTCCGTCACAGAGCACGCATTCCAGAACCTTCCAAAGGACACTAACGGTTCCGTCCCCGTCGATGACTTGAAACGGTTTCTAGAAGCTTACTTCGAAGGTGCAGGGGATGATCTGGTGTACCTTGAACCAGAGGATTTCGTCCCAGAGCCAGAGGGTTTCTTGCCCAAGGTGAAACACCCTGAGATAAGGGCGTGGGCGCTTCAGGTTCATTCCCTTTGGAAAAACCTGAGCAGGAAAATATCCAGTGAGGTGCACACCCACCCACAGTTGCATACACTGCTTCCTCTTCCAGCTTCTGTTGTCATTCCTGGTTCTAGATTTCGTGAGGTTTATTACTGGGATTCCTACTGGGTAATTAGAGGCTTGCTGGTGAGTAAAATGTATAAGACTGCTAAAGCTGTTGTCACCAATCTCATTTCCTTCATAGAGGAATATGGATTTGTGCTTAATGGTGCTAGAGCATACTATACTAATAGGAGCCAGCCCCCCCTTTTAAGCGCTATGATTTATGAGATATACTGTAGCACTGGTGATATAGAATTAGTTAAAAGATCTCTACCTGCACTACTGAAAGAGTATGAGTTTTGGAATTCAGATATACATAAAGTGACCATTTTGGATGCTCAAGGTTTCACTCACACCTTAAATCGTTATCATGCAATGTGGAACAAACCCAGGCCAGAATCGGCCACAATGGACAAGGCATCAGCTTCCAAGTTCTTGAATGTTTCAGAAAAACAACAATTTTACCTTGACCTGGCATCAGCTGCTGAATCAGGATGGGATTTCAGCACAAGATGGATGAGAGATCCTCCTCATTTCACCACATTGTCTACAACATCAGTGATACCTGTTGATTTAAATGCATATCTACTTGGGATGGAACTTAATATTGCCTTCTTTGCAAAAGTTACTGGAGATAATAGTACTGCTGAACACTTCATGGAAATTTCTGATGCTAGAAAGAAGGCAATAAACTCTGTTTTCTGGAATTCAAACATGAAACAATGGCTTGATTACTGGCTCGGCAATAGCAAGTCTGAGGAGGTTCATGTTTGGAAAACCCTGCAGCAGAATAAAAATATATTTGCTTCCAATTTTGTTCCTTTGTGGATGAAGCCATTTCACTCAGATACTTCACTTGTGGGTAGTCTTGTTGAAAGTCTCAAAACTTCTGGCCTGCTTCGTGCTGCTGGAGTTGCAACTTCTTTGAGTAATTCAGGACAACAGTGGTAA 1482 0.4359 MAEEFSFHTHKLHLLHWLCLFYFSLTLLTVTGSPTTMSMDHVKPSTPLVSFLERLQETAFKTFGNSNFDPKTYVDLPLKFSLSVTEHAFQNLPKDTNGSVPVDDLKRFLEAYFEGAGDDLVYLEPEDFVPEPEGFLPKVKHPEIRAWALQVHSLWKNLSRKISSEVHTHPQLHTLLPLPASVVIPGSRFREVYYWDSYWVIRGLLVSKMYKTAKAVVTNLISFIEEYGFVLNGARAYYTNRSQPPLLSAMIYEIYCSTGDIELVKRSLPALLKEYEFWNSDIHKVTILDAQGFTHTLNRYHAMWNKPRPESATMDKASASKFLNVSEKQQFYLDLASAAESGWDFSTRWMRDPPHFTTLSTTSVIPVDLNAYLLGMELNIAFFAKVTGDNSTAEHFMEISDARKKAINSVFWNSNMKQWLDYWLGNSKSEEVHVWKTLQQNKNIFASNFVPLWMKPFHSDTSLVGSLVESLKTSGLLRAAGVATSLSNSGQQW. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06784 493 PRINTS Glycosyl hydrolase family 37 signature 297 314 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 PRINTS Glycosyl hydrolase family 37 signature 227 245 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 PRINTS Glycosyl hydrolase family 37 signature 407 423 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 PRINTS Glycosyl hydrolase family 37 signature 485 493 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 PRINTS Glycosyl hydrolase family 37 signature 332 349 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 PRINTS Glycosyl hydrolase family 37 signature 364 381 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 Pfam Trehalase 67 493 IPR001661 GO:0004555|GO:0005991
Seca11g06784 493 Gene3D - 57 493 IPR012341 GO:0005975
Seca11g06784 493 SUPERFAMILY Six-hairpin glycosidases 63 493 IPR008928 GO:0005975
Seca11g06784 493 PANTHER TREHALASE 44 493 IPR001661 GO:0004555|GO:0005991
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06784 Seca-Chr11 168113589 168119100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06784 42 493 Trehalose Biosynthesis Gene Families AT4G24040 58.114 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06784 K01194 - gmx:547539 769.615