Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06769 ATGGGTGTTCCACAAACTCCAACCCCCTCTCCACATGTGTATCCACAGGAACTTCAGTTGAAACTTTACCAGGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTTTGGTTCTGCTGTTTTACTTGTTCTACCTCAAGAGGAGGGCTTCCTCTCTCTCATCTCCTCCTCTCCACATATTTCCCAGGACTGCCAATTCTCAAACTTCATATTCCTATCATTCATCAACTTGCCGTTTAGATCTGACAGTGCAATTTCTGGACAAACTTCCAAGAATTTTGTTTGATGAGGATTTGAGAACAAGGGATTCAGTGAAGCTAAAAGCAAAGGTTGTTTTATTAAATTTTGCACACAGATGTTGTGTTTGTTTGGGAGAATTTGAGCTGAAAGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAGATTGCATACATAATTGGCTGCAATCAAACTCCACATGTCCACTTTGTAGATGTTCCATCATCCCCACAGCCAAGTTCCTTAATCCTGCACCATCTATTGTTGTACAAGACCCACCACAGCAGGGTAGCATTTCAGGCTCTTCATCACATAGCATATCAATGCCACCTCAACTAGAAGATGAAGCTGGTGCTTCCTCAAATAGTAATACTACCATTTTTCAAGGGAATGATGTATTAATGAGGTAG 684 0.4064 MGVPQTPTPSPHVYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHIFPRTANSQTSYSYHSSTCRLDLTVQFLDKLPRILFDEDLRTRDSVKLKAKVVLLNFAHRCCVCLGEFELKEELLQIPYCKHVFHIDCIHNWLQSNSTCPLCRCSIIPTAKFLNPAPSIVVQDPPQQGSISGSSSHSISMPPQLEDEAGASSNSNTTIFQGNDVLMR. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06769 227 CDD RING-H2_EL5-like 120 163 - -
Seca11g06769 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 168 IPR013083 -
Seca11g06769 227 SUPERFAMILY RING/U-box 87 170 - -
Seca11g06769 227 PANTHER RING-H2 FINGER PROTEIN ATL16 11 188 IPR044600 GO:0016567|GO:0016740
Seca11g06769 227 SMART ring_2 121 162 IPR001841 -
Seca11g06769 227 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Seca11g06769 227 MobiDBLite consensus disorder prediction 184 227 - -
Seca11g06769 227 Pfam Ring finger domain 120 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06769 Seca-Chr11 168012207 168013944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06769 3 222 C3H Transcription Factor Family AT4G10150 32.743 1.79e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06769 K19039 - gmx:100806554 295.434