Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06760 ATGGAAGCGGATTTCGCGACGAATGATATGCTCACGCTCACACAGGACACGTTTGACGCCCTCGATAATGATAATGTAGATATTGAAGGGGAAAGATGTGGAATATGCATGGACGTTGTTATTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCAACCATCACTAATCTATGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGAAGACTCATTCTTCAGAGATGATGACTGGTCCATCGAAGGGAAGAATAACACACTGTCATTTCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGAGATGGCTGCAAAGTTCGAAATGGATTGGCAACTATCCAAGGAGATTCTGGTCTTGATACATCAATTGCATGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGACAGTACATGGTTATGCCCAAGATGTGTGGTTGATGGAGTTTTGAAAGGAACAGATACCAATTCAATAGAGAGGGAAACCGTGGAATGTAATCCAGATAATTGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCTGGAAAAGTGTCTGTGTCTATTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCGATGGTTGACAGAAATAAATCGGTTCCAGCAACAAGTGAGAAAAGCTTTTTGACTCTTGAAGTTGATGGGGATCCACTGATTGAATCATGTAATTCAATGTCAGATACAAATAATCAGCAGCAGGGGACAGAGAATACAACTATGCCGCCAATCATGGAGGGAAACGAGCTGGAGCTGTCGTTATCAAACAACAATATATCCTGTAACCTAACTTCTAAATCCTTCGTGCATAACGATTTAAAGAAAAGTGATAATGGAGCAAGGAATGAACTGAGTAGCTTTGATGGAACCAAGTTATTAGATGAGTCCCATGGCAAAACTAGTCCATCCAGAATTGAATCTGATTTGGGTCTTCATCTCGGTTTGTCAGTGGGCTCTTTTTTATCTCTTGATAATGCGGACAAGAATGAAACAAACGATCAAGCAACGGATATCTTGCGCTTGAGTCCAGAAAAAAATCTTCTGAAAGGAAATGAAATAGAAACCAATGCTTGTAAGGGCAATGCCAGAGTGACTGGTGGGAAGAGGAAGCATGTTGATTACAGTTATGATCAAGTTCATGTAAAAGCTGATGATGGAGATGCCAAGCCTGAACTTTCAGTTGAAGTTTCACAAAAGAAAATTAGAGCATCTGGTAGTCAGATGACTGGTGCTAATGACTCGACTGATGCTCATCTTTCTGACAATGCTAAAAAAAACCCTGCCTTTCTAAAACATTCTCCAAAGAAGGAGATTGTGGCATCTGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCTTTCCAAGGGACTTGCTGACACTAATGCTTGTGACAAGTTAGGTGAAAAGAAAGAAAATATGGCTGGATTGAGAGTGAAAAAGATTATGAAGAGAGTTTCTGATGATGGAGAATCATCCTCAGTAGTTCAAAATTTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGAAAATCATTTTGATGCAAAGCTTCTTGAAGCATTTAGGGCTGCCATAGCAGGGCCAAAAACTGAACCTGTTAACAAGTTATCCCGTTCAGCTCTAAAGGCAAAGAAATCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAGGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAACCTGAAAAGATCGAAACTTTAAAGTCAGTTCTTGATCTACTTAGAAAAAGTTCAGAGAGCCCAGAATCAAAGCAAGATCCTGAATGTCAGGCAAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAAGAGGATTCCGTACTTAAAACTATTGCTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGACCAAATCTATCTCTTGATAACAATACTATTAAAACAACAGAGGTAAATAATCTTTTATCAAAGACCAGAGTTTGTTCATCTGAGAAAAAGGTAGATAAGAAGATTGTACATGGTCCAGCTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCCTCAGCTGGTGCGAAAGTGGGCCTTAAATCTGATTCTGTGAAGACTGATAAAAGAAAATGGGCATTGGAGGTTCTTGCGAGGAGAACAGCTGCTGCAAGCGGGAACACAGCAAATGAAAGTCAGGAAGACAATGCAACTCTCAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCAGTGTTGGCACCTTGTCGTCACAATAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGTCTGACAGAGCGCTTATTGAGGAACACAAATCTGCCAGTCATTCGCAGAACAGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATCTGAACCTTTGTTCACAAGAGCTCTTGCATCACACAAATAACGCAAAATCCAATGTAGCCACAGATACAAGTCGACCAGCCTCATTAGCAGTTCATACTGATCAATCAGAACTAAATACTGATGATCCTTCAACTGACCCTGAAGTCCAAATAGCCCTGAAAAATGCTGGTCTGTTGTCTGATTCACCACCTAGCAGTCCACATAAGAACAAAGAAATATGCAATGATGATATGCCGGGGCCTGATAATATACTTGAAATGGATTCTCTTCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCTAGTGTTGTGAAGGTCTCAAACCCGAAACAAGAGCAAAGTGAATCAAAAGTGAAACTTGTTTTCTCAACCATGAACTTGAAGAAAACTGATAAAGCTTTGGATGGTGCAGACTGTGAGGGGTCTGAAAACAATGAAGTGCCAGCAGATGCCTCTTGCTCACCAAATTGTCACAATGATGCAGTCTGCACGGATTCTACAATTGATGCTGAGATTGGCCAGCCTTCTGTTTCTTCTGAGCTCCTACCATGCGAGGGAGCTGTTGAGCCAGTCGATTCAGAATTTGAAGAATTATATGGTCCTGATAAGGAACCGCTTATAAAGAATTTTCCAGATGGTGAATCAAGATCATTACATGAAGAGGGCAACACAGAAATTCAAAGCGAGGCCAATGGTTGTCATAATGACAAAAAACATGTCTTGGACAAAGCAGTAAATACTTTGGAATTCAGGAATGAGAATGTCACAGAAAAGGTGTTTGTCTCTACCATCACGGACAAATCTTCTAATATATCTGGGTCTGAAGAAAATTTCCAAAGGAAGGAAGAGAAATCTGACATCCCTGCAAAGCAGACCGACTCTGTAAATCATATAACAAGGAAGGTCGAAGCCTACATTAAGGAACATATCAGGCCACTGTGCAAGAGTGGTGTGATCACGGCTGAACAATACAGGTGGGCTGTTGCAAAAACTACTGATAAGGTTATGAAGTATCATTGCAAATCAAAAAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTAATTTTCTCGAGTTATTTATTGTTCGTTATTCACCTTTTTGGGTGCTATGCTATGTTGCTCCCCGTTTAGAAACTCGCTTTATTAGGTAG 3906 0.4014 MEADFATNDMLTLTQDTFDALDNDNVDIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEEDSFFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIQGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVVDGVLKGTDTNSIERETVECNPDNCNSECHAEDSFSGKVSVSIADAGETAVVVSMVDRNKSVPATSEKSFLTLEVDGDPLIESCNSMSDTNNQQQGTENTTMPPIMEGNELELSLSNNNISCNLTSKSFVHNDLKKSDNGARNELSSFDGTKLLDESHGKTSPSRIESDLGLHLGLSVGSFLSLDNADKNETNDQATDILRLSPEKNLLKGNEIETNACKGNARVTGGKRKHVDYSYDQVHVKADDGDAKPELSVEVSQKKIRASGSQMTGANDSTDAHLSDNAKKNPAFLKHSPKKEIVASDIMNIVKGTNRRLSKGLADTNACDKLGEKKENMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVRNKSSINFEENHFDAKLLEAFRAAIAGPKTEPVNKLSRSALKAKKSMLQKGKVREHLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSESPESKQDPECQAKNPILSRLYLADTSVFPRKEDSVLKTIASSEQTKQNNPSGKGPNLSLDNNTIKTTEVNNLLSKTRVCSSEKKVDKKIVHGPAGKVHLSSHSEGTSVSSSAGAKVGLKSDSVKTDKRKWALEVLARRTAAASGNTANESQEDNATLKGNYPLLAQLPTDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHHTNNAKSNVATDTSRPASLAVHTDQSELNTDDPSTDPEVQIALKNAGLLSDSPPSSPHKNKEICNDDMPGPDNILEMDSLPELDIYGDFEYDLEDEDYIGASVVKVSNPKQEQSESKVKLVFSTMNLKKTDKALDGADCEGSENNEVPADASCSPNCHNDAVCTDSTIDAEIGQPSVSSELLPCEGAVEPVDSEFEELYGPDKEPLIKNFPDGESRSLHEEGNTEIQSEANGCHNDKKHVLDKAVNTLEFRNENVTEKVFVSTITDKSSNISGSEENFQRKEEKSDIPAKQTDSVNHITRKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKVMKYHCKSKNANFLIKEGEKVKKLAEQYANFLELFIVRYSPFWVLCYVAPRLETRFIR. 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06760 1301 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Seca11g06760 1301 MobiDBLite consensus disorder prediction 761 777 - -
Seca11g06760 1301 Coils Coil 540 560 - -
Seca11g06760 1301 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Seca11g06760 1301 PANTHER RING FINGER PROTEIN 41, 151 114 1271 - -
Seca11g06760 1301 SUPERFAMILY RING/U-box 24 78 - -
Seca11g06760 1301 MobiDBLite consensus disorder prediction 701 724 - -
Seca11g06760 1301 SMART ring_2 123 182 IPR001841 -
Seca11g06760 1301 SMART ring_2 33 71 IPR001841 -
Seca11g06760 1301 MobiDBLite consensus disorder prediction 750 781 - -
Seca11g06760 1301 Pfam PHD-finger 148 183 IPR019787 -
Seca11g06760 1301 SUPERFAMILY FYVE/PHD zinc finger 147 185 IPR011011 -
Seca11g06760 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 183 IPR013083 -
Seca11g06760 1301 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Seca11g06760 1301 SMART PHD_3 131 183 IPR001965 -
Seca11g06760 1301 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Seca11g06760 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 109 IPR013083 -
Seca11g06760 1301 MobiDBLite consensus disorder prediction 916 975 - -
Seca11g06760 1301 MobiDBLite consensus disorder prediction 916 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06760 Seca-Chr11 167941176 167951936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06760 33 125 C3H Transcription Factor Family AT3G58030 29.000 6.95e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca11g06760 PHD 5.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06760 - - gmx:100808102 1951.02