Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06751 ATGGCTTCCTTAGCCTTAATCTATGTATTTTATGTCTCTGTTTTCCATCTTCAAACTACCAAAGCCAAACAAATTTGCAATAGCTTATCATGCGGCGATATTGATATTCAGTTTCCTTTCGGATTAAAAGAAGCTAATCAAGACCGTCGCTGTAGCTATTACCCCATTCCAAGCTTCCAACTTTCGTGCAACAACCATAGCCAAACCATTCTGAGGCTCCCAAATACAGGTGAGTTAGTGGTGAAAAGCATCGATTACGAAACCCAAAGCATCGAAGTCAACGACCCTAATGAATGCCTCCCACAACGGTTCTTGCATGATTGGAACCTCACAGGTTCACCTTTCAAGTTAAACCCCATCATTTATGGACCTTACCCTTTTAACCTCACTTTCCTTCGTTGCCCTTCTAATGTGACCAAGTCATCTGAATTCCCATTAGAACCAATTTCTTGCTTGAGCTCCAAATTAGGAGACACAAACTCATCCTCGTCCTCGGTCATAGTTTCATGGGGACGGCCTATTGTTTCGTCAACGTTTATGTCTGAAGCATGCGAGGTGATTTCCTCGGCTTATGTCCCCCTTCCATGGAGGGAGATGCCCATGTGGCCATATTGGCCTGATCTTAACGATGATGTTGGGTTGGTGTGGACCGAACCCAGATGTGGAAACTGTGCATTTAGTGGCCAAGTTTGTGGGTTCTCTAAGGATAAAAGCCTTCAAGTTGAATGTTTCCCTAGTCCCTCCACCAACACAGGTATTTCAAGAAGTGCCAAATACGGTATAGCTATAGGAGTGGGAATACCTGGAATCTTGTGTGTAATTGGATTTTCTTGCTTTATCTGTGGTAAGCTTACTATGATCGCACATCGTCGACGAAGCACAGGGCTTCCGGTCACAATTTCCTTGGAGCCCATTCCTTACGTAATGGGGCTTGATGGTGCCACTATTGAAAAGTATCCCAAAACTCTTCTTGGGGAGAGTGGACGTTTATTGAAGCCCCATGACAATATTTGTGCAATATGCCTATCTGAGTATGAACCCAAGGAGACGTTGAGGAGCATACCTGAATGCAACCATTATTTTCATGCAAATTGTATAGACGAGTGGCTCAAAATGAATGAAACCTACAGCTACTACCGTTTTTTCAATTCTGCTATGACTCTAAACTTGTCCACTCCTTCCTTCTCTCGTCTACTTCATCACCCTTCTTCTTCTTCTTGTGCTGTCCCCAAATTCTCTGAAACCTGTGCCAACCACAACACCAACACTCCTTTTCCTTCTCTCTTGTTTTCTACTTCCTCGCTTTCGAGGTTCTTCAACGCCAAAGCTTCCGTCAGCGAGAGCCAAAATGAAACCTCTGACCACACCGCCTCCGACTCCGACCAATTGGACCAGCAACTCGTGCTCCGAGTCGCCGCCACCGCCAAAGACGCCGATGAGGCATTGCAGATGATCGCCGATAACTCTACCAGAAACGGCGGTGTTGTTTCCACCTCTGATTCTTGCTCCATTATTTCTGCTGCGCTTAACCGGAATAATCACCAACTCGCTTTGTCCGTTTTCTACGCTATGCGCTCCAGTTTTCATCAAGTTGGTGATAATGGCCCTTTAGTTGAGAGATGGAAGTGGTCTAGGCCAAATGCACATGTTTATACACTGCTGATTCAGGGTTTGGCGGCATCGTTGAAGGTTTCGGATGCTCTTCGCGTGATTAAGTATATCTGTGAGGTGGGCGTGTCTCCTGGTGAGGAGGTCCCTTTTGGGAAGATAGTGAGATGTCCTACTTGTCGGATAGCTGTTGCTGTTGCGCAGCCACAGCAAGGTATTCAGGTATTTCCCCATGCCTATCAGCCTATGCCAAACATTAATTGTATTAGTACTTTGGTTATCATGTTTAAGTTAATTTATGTTGAGATATTTATATTCTGTAATTTAATAAAGCTCAAATCATTGGGATGA 1959 0.4467 MASLALIYVFYVSVFHLQTTKAKQICNSLSCGDIDIQFPFGLKEANQDRRCSYYPIPSFQLSCNNHSQTILRLPNTGELVVKSIDYETQSIEVNDPNECLPQRFLHDWNLTGSPFKLNPIIYGPYPFNLTFLRCPSNVTKSSEFPLEPISCLSSKLGDTNSSSSSVIVSWGRPIVSSTFMSEACEVISSAYVPLPWREMPMWPYWPDLNDDVGLVWTEPRCGNCAFSGQVCGFSKDKSLQVECFPSPSTNTGISRSAKYGIAIGVGIPGILCVIGFSCFICGKLTMIAHRRRSTGLPVTISLEPIPYVMGLDGATIEKYPKTLLGESGRLLKPHDNICAICLSEYEPKETLRSIPECNHYFHANCIDEWLKMNETYSYYRFFNSAMTLNLSTPSFSRLLHHPSSSSCAVPKFSETCANHNTNTPFPSLLFSTSSLSRFFNAKASVSESQNETSDHTASDSDQLDQQLVLRVAATAKDADEALQMIADNSTRNGGVVSTSDSCSIISAALNRNNHQLALSVFYAMRSSFHQVGDNGPLVERWKWSRPNAHVYTLLIQGLAASLKVSDALRVIKYICEVGVSPGEEVPFGKIVRCPTCRIAVAVAQPQQGIQVFPHAYQPMPNINCISTLVIMFKLIYVEIFIFCNLIKLKSLG. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06751 652 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Seca11g06751 652 Gene3D Tetratricopeptide repeat domain 433 593 IPR011990 GO:0005515
Seca11g06751 652 Pfam RING-like zinc finger 338 366 IPR001841 -
Seca11g06751 652 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Seca11g06751 652 ProSiteProfiles Zinc finger RING-type profile. 338 369 IPR001841 -
Seca11g06751 652 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 375 IPR046948 -
Seca11g06751 652 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 381 IPR013083 -
Seca11g06751 652 SUPERFAMILY RING/U-box 332 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06751 Seca-Chr11 167869836 167877575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06751 24 373 C3H Transcription Factor Family AT2G46495 34.174 5.96e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06751 - - gmx:100810240 523.087