Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06720 ATGGCCGACACAGTTGCTGTTGCTGAAGTACCCACAAGGAGGTCAAGGGGCAGAAAGGCCCTGAAGGAGAAAACCCCATCAACAAATGAGGCTAACATTTTGGCTGGGAACTCTGCCACACCAATTTCGCCCCCATCTGAGAAATTATCTCAGCCCAACAAGGGACGAGCTGCTTCTAAGAAACAACAGTCCTCAAAGCAGCAATCTTTCGAGCAAGAGTTGCTTGAGATGCAGGAAAAGCTGCAGCAGTTGCGTCTCGAGAAGGAGAAGACTGAAGAGCTCTTGAAGGTCAAAGACGAGGCCTTGAAGCAGAAGGAAGAAGAGCTCGAAAATCGTGGCAGGGAGCAAGAGAAGCTTCAGATTGAGCTGAAAAAATTGCAGAAGTTGAAGGAGTTCAAACCCACCATGAATTTGCCTATGTTGTTGAAAGACAAGGAACAAGACAAGAAGGAGAAGAAGAAGAATGGGTGCCCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTATGGTGCAAAGACCAATGGAATGGGATTAAGAAAACGAATCCAGAGGCAGAATTCAAGGACATTACTAACATGCTGGGGGCTAAATGGAAGACAGTTAGCGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCAAACTGAAAAAGAAGCTTATTTGCTGGTAATTGCCAAGGAAAAACGTGAGAGTGAGGCAATGAAGCTCTTGGAAGAGGAGCAGAAGCAGAAGACTGCCATGGAATTGCTTGAACAGTATATCCAATTCAAACAAGACACAGAAAAGGATGGCAAGAAGAAAAAGAAAGAGAAGGATCCTTTGAAACCAAAGCACCCTGTGTCAGCTTATTTCTTGTTCACTAACGAAAGGCGTGCAGCTCTTCTCGCTGAGAACAAGAATTTCTTGGAGGTTCCTAAGATCACAGCTGAAGAGTGGAAAAACATGACAGAAGAACAAAGGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAGGAGAAATATGTGATAGAAATGGAGGCTTATAAGCAGAAAAAGGATGAGGAGGCTGCCAGTCTCATGAAGGAAGAGGAGGAGCATATGAAGCTTCAAAAACAGGAGGCCTTGCAACTGTTGAAGAAAAAGGAGAAAACTGAAAACATTATCAAGAAAACAAAATTGAATCGTCAGAAGAAGAAACAAAACAAGGAAGATAAGAATTCTGATCCAAACAGGCCTAAGAGGCCTCCATCTTCATTCCTCCTATTCAGGTGA 1251 0.4373 MADTVAVAEVPTRRSRGRKALKEKTPSTNEANILAGNSATPISPPSEKLSQPNKGRAASKKQQSSKQQSFEQELLEMQEKLQQLRLEKEKTEELLKVKDEALKQKEEELENRGREQEKLQIELKKLQKLKEFKPTMNLPMLLKDKEQDKKEKKKNGCPEKKRPSPPYILWCKDQWNGIKKTNPEAEFKDITNMLGAKWKTVSAEEKKPYEEKYQTEKEAYLLVIAKEKRESEAMKLLEEEQKQKTAMELLEQYIQFKQDTEKDGKKKKKEKDPLKPKHPVSAYFLFTNERRAALLAENKNFLEVPKITAEEWKNMTEEQRRPYEEMAKKNKEKYVIEMEAYKQKKDEEAASLMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKLNRQKKKQNKEDKNSDPNRPKRPPSSFLLFR. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06720 416 MobiDBLite consensus disorder prediction 372 416 - -
Seca11g06720 416 MobiDBLite consensus disorder prediction 1 74 - -
Seca11g06720 416 SMART hmgende2 275 343 IPR009071 -
Seca11g06720 416 SMART hmgende2 159 229 IPR009071 -
Seca11g06720 416 SUPERFAMILY HMG-box 148 222 IPR036910 -
Seca11g06720 416 MobiDBLite consensus disorder prediction 135 165 - -
Seca11g06720 416 MobiDBLite consensus disorder prediction 26 74 - -
Seca11g06720 416 Coils Coil 60 129 - -
Seca11g06720 416 Coils Coil 324 394 - -
Seca11g06720 416 Gene3D High mobility group box domain 162 221 IPR036910 -
Seca11g06720 416 CDD HMG-box_AtHMGB6-like_rpt1 161 228 - -
Seca11g06720 416 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 160 228 IPR009071 -
Seca11g06720 416 Gene3D High mobility group box domain 259 355 IPR036910 -
Seca11g06720 416 Pfam HMG (high mobility group) box 161 221 IPR009071 -
Seca11g06720 416 Pfam HMG (high mobility group) box 276 342 IPR009071 -
Seca11g06720 416 SUPERFAMILY HMG-box 263 348 IPR036910 -
Seca11g06720 416 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 415 IPR044601 GO:0003677
Seca11g06720 416 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 276 342 IPR009071 -
Seca11g06720 416 MobiDBLite consensus disorder prediction 372 404 - -
Seca11g06720 416 MobiDBLite consensus disorder prediction 142 160 - -
Seca11g06720 416 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06720 Seca-Chr11 167628875 167631981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca11g06720 HMG_box 1.8e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06720 K09273 - gmx:100783033 509.22