Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06711 ATGACTTTACCTTCCATCAAGCACACTAACCACCTCAACCGAACCAAACTGGTCATGAGACCCAGTGAAGAGTGCCTAATGAAGCATCCTTATCCTAAACTCATTCGAATACGTGTCGCTGACGGTGATGCCACGGACTCTTCCAGCGACGAAGAAGAAGAAAAAACAGCCTCTACGTCTTTCGCTCACCGACGAGTTAAAAACTTCATTAACGAAATCACTATTGACTCTGCTGAGAACAGAGGTGATAATGTTGCTAATTCGAGGAAGCCAAAAAGCAGGGGAAAGTCCAGAACCGACGGAGCTCCGGCGAGCCGGCGGCGGCTGGGAGTTTACACCGGGAAGAAATATAGGGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCTCTACGCCGCCAGCGGCTGTGGTTAGGAACCTATAATACCGCCGAAGAAGCTGCCATTGAATATGACAAAGCCGCGATTGAGCTTCGTGGTCCCGACGCGCTCACCAATTTCATTACGCCGCCGCCGAGGAGTAAAAAAAACGGTTACAGTTCCGGCGAAGAGTGTGGTAACAGTCACTTGCCTTCTCCCACTTCGGTTTTTCAGTGTTGTTCGTCGTCAGAGGAAGGTGAGTCTGTAACCGCCAGAGGTGAATCACGCGAGGAATGTGAATATGAACATTCATGCGTGAGGAATTTGTGTGGTAAAGTTTCAGAGGAAAATTTGAAATCGGAGTCAATATTTCCATTTCCAAGCGATGTGTTGTTTGACTTCGAAAGCACGCTAGAGACATTTGAAAACGAGAGCGTCTTCTTCTTCCCGGATAATTTATGTGGAAGCTTTGTCCCTTCTAGTGAGTGTGACAGTTTCGATTTTGGTTTTAGCAGTGATTTTGAGGATTTGTTTCTTTCGGATCCCCTTGTTGCTCCTTGA 936 0.4818 MTLPSIKHTNHLNRTKLVMRPSEECLMKHPYPKLIRIRVADGDATDSSSDEEEEKTASTSFAHRRVKNFINEITIDSAENRGDNVANSRKPKSRGKSRTDGAPASRRRLGVYTGKKYRGVRQRPWGKWAAEIRDPLRRQRLWLGTYNTAEEAAIEYDKAAIELRGPDALTNFITPPPRSKKNGYSSGEECGNSHLPSPTSVFQCCSSSEEGESVTARGESREECEYEHSCVRNLCGKVSEENLKSESIFPFPSDVLFDFESTLETFENESVFFFPDNLCGSFVPSSECDSFDFGFSSDFEDLFLSDPLVAP. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06711 311 MobiDBLite consensus disorder prediction 175 192 - -
Seca11g06711 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 217 - -
Seca11g06711 311 MobiDBLite consensus disorder prediction 80 108 - -
Seca11g06711 311 MobiDBLite consensus disorder prediction 83 103 - -
Seca11g06711 311 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Seca11g06711 311 SUPERFAMILY DNA-binding domain 116 172 IPR016177 GO:0003677
Seca11g06711 311 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Seca11g06711 311 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Seca11g06711 311 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Seca11g06711 311 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Seca11g06711 311 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Seca11g06711 311 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Seca11g06711 311 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Seca11g06711 311 MobiDBLite consensus disorder prediction 171 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06711 Seca-Chr11 167555122 167556057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06711 1 271 AP2-EREBP Transcription Factor Family AT4G27950 39.510 4.47e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g06711 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06711 - - gmx:100813992 259.61