Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06709 ATGGAATTTCTACGCATTTTATCTTCCATTTACCTATTGAGTTTGATTCTCTTACAAGGAAATGCCGAACCTCTTGAAGATAAGAAGGCTTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTAGGCCTCTGAATTGGAATGAGAGCTCTTCCATGTGTGCTACTTGGACTGGAGTTACTTGCAATGAAGATAAGTCTCGTGTAATAGCCATTCGATTACCAGGGGTTGGATTTCATGGCACCATCCCACCTGATACCATTAGCCGCCTCACAGCGCTGCAAACTTTGAGCCTCAGATCCAACGTCATAACTGGGCAATTTCCTTCTGATTTTCCCAATCTCAAAAACTTGTCTTTTCTTTACCTTCAGTTCAACAATTTGTCTGGTCCTTTGCCGGATTTCTCAGCTTGGAAGAACCTTACTGTTGTCAATTTGTCTAATAACCATTTCAATGGCACCATTCCTGTCTCCCTTTCCAATTTGACTCAGCTTGCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGTGAAATTCCTGATCTCCAGTTATCCAGATTGCAGCTGCTGAATTTGTCTCACAACAATTTGCAGGGCACTGTGCCTAAATCCCTTCAGAGGTTTCCTGAGTCAGCATTCTCTGGGAATAACATTTCCCTTGGAATTTCCCCTGCTTTTTCTCCTGTGTCTCCACCGGCTTATGAGCCATCTTCGACTTCTAAGAAACATGGAAGGCTCAACGGAACGGCAATGCTGGGAATTATTGTTGCTGGTAGTCTTTTAGGCCTTGTAGCATTTTGTTATTTGATGTTTCTGTGCTGCTCAAGAAGAAGGGATGGAGATGATGAAGTCTTTAGTGGAAAGTTGCGGAAAGGGGAAATGTCTCCGGAAAAAGCAGTCTCAAGGAACCAGGATGCAAATAATAAACTGGCTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGAAAGGGCACATTTGGGACTGCATACAAGGCAATACTAGAGGATGCAACCACAGTGGTTGTGAAGAGGTTAAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAACACATGGAAATTGTGGGGAGTCTTAAACATGAGAATGTGGCTGAGCTGAAGGCATATTATTATTCCAAAGATGAGAAACTGATGGTATATGATTACTTCAGTCAGGGGAGCGTGTCTTCTATGCTGCATGGTAAAAGAGGAGAGGACAAGGTGGCTTTAGATTGGGATACTCGGCTGAGAATAGCTTTAGGTGCTGCCAGAGGCATTGCTCAGATCCATGTTGAGAATGGTGGTAAGCTTGTACATGGCAACATCAAGTCCTCAAATATCTTTCTCAATACTAAACAATATGGTTGTGTATCTGACCTTGGGCTGGCAACCATATCAAGCACACTTGCTCTGCCTATCTCACGAGCTGCTGGTTACCGAGCACCTGAAGTTACAGACACCAGGAAAGCAGCACAACCTTCAGATGTTTACAGCTTTGGTGTGGTTTTACTAGAGCTTCTCACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATTATCCACCTAGTGAGGTGGGTTCATTCAGTTGTGAGAGAGGAGTGGACAGCTGAAGTGTTTGATTTAGAGTTGATGAGATTTCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTAAGGATGCCTGATCAGAGACCTAAGATGTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATACAGGGACCAAGCCATCAGCTGAGAACCAACCGGAACTTAAATTATCTCAACGTGACAATGATAACTCCTCTTCAACTCCATCCCCATTCCCAAAAGGAAGTGAATGA 1911 0.4359 MEFLRILSSIYLLSLILLQGNAEPLEDKKALLDFVNKFPPSRPLNWNESSSMCATWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLTALQTLSLRSNVITGQFPSDFPNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGTIPVSLSNLTQLAGLNLANNSLSGEIPDLQLSRLQLLNLSHNNLQGTVPKSLQRFPESAFSGNNISLGISPAFSPVSPPAYEPSSTSKKHGRLNGTAMLGIIVAGSLLGLVAFCYLMFLCCSRRRDGDDEVFSGKLRKGEMSPEKAVSRNQDANNKLAFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVAELKAYYYSKDEKLMVYDYFSQGSVSSMLHGKRGEDKVALDWDTRLRIALGAARGIAQIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSTLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRFPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDTGTKPSAENQPELKLSQRDNDNSSSTPSPFPKGSE. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06709 636 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Seca11g06709 636 Gene3D Ribonuclease Inhibitor 26 135 IPR032675 -
Seca11g06709 636 Gene3D Transferase(Phosphotransferase) domain 1 401 622 - -
Seca11g06709 636 MobiDBLite consensus disorder prediction 598 636 - -
Seca11g06709 636 FunFam pollen receptor-like kinase 1 295 400 - -
Seca11g06709 636 SUPERFAMILY L domain-like 37 207 - -
Seca11g06709 636 PANTHER OS05G0588300 PROTEIN 6 607 - -
Seca11g06709 636 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Seca11g06709 636 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Seca11g06709 636 MobiDBLite consensus disorder prediction 600 636 - -
Seca11g06709 636 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06709 636 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Seca11g06709 636 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Seca11g06709 636 Gene3D Ribonuclease Inhibitor 136 226 IPR032675 -
Seca11g06709 636 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Seca11g06709 636 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Seca11g06709 636 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06709 Seca-Chr11 167530831 167534859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06709 1 629 Receptor kinase-like Gene Family AT4G23740 64.752 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca11g06709 Pkinase 9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06709 - - gmx:100804799 1051.58