Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06697 ATGGGCAACTGCAATAGCGGCGGCGGCGGCGCCACCTATTCCGGCGAGCCTCCCCAGCGCAACGGCCCCACTGTCCTCCCTCCCAACTCCAACCCCTCACGCCCTCCCCCACTCCCGAAACCACAACCACCCCTCTCCTCCTCCCTCGGCCGCGTTCTCGGTCGCCCCATGGAGGACGTTCGCTCCATCTACGTCTTCGGCCGCGAGCTTGGTCGAGGCCAATTCGGCGTCACCTACTTGGTCACACACAAAGTGACGAAGGAGCAATTCGCTTGCAAATCCATCGCCACCCGCAAACTCATCAACCGCGACGACATCGACGACGTTCGCCGTGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATTGTGGAGCTCAAGGGTGCCTACGAGGACCGACACTCCGTCAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATTGCCAAGGGCCACTACTCCGAGCGTGCCGCCGCTAACTCATGCCGCCAGATCGTGACGGTTGTTCATAACTGTCACTCCATGGGAGTCATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTGCTCAGCAATGACGAGAACTCGCCTCTTAAGGCCACGGATTTTGGTCTCTCTGTGTTTTTTAAGCCAGGAGATGTGTTTAAAGATCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTGCTTTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGGCATATTGATTTTGTATCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGCTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGACATTGCTGTTTTAACCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTTTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGTTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCTAAATTGGGTAGCAAACTATCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCAGATGTAGATGGAAATGGAACCATTGATTATATTGAATTTATAACCGCTACCATGCATATGAATAGAGTGGACAGAGAGGATCACCTATATAAAGCCTTCGAATATTTCGACCAAGATAAGAGCGGGTACATCACAACAGAAGAGTTGAAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAGACAATAAAGGAGATCATTGCTGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGAAACCCAGATATAACCCACAGACGTCGCAAATAA 1545 0.4848 MGNCNSGGGGATYSGEPPQRNGPTVLPPNSNPSRPPPLPKPQPPLSSSLGRVLGRPMEDVRSIYVFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSNDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFVSDPWPSISSSAKDLVKKMLRADPKERLSAAEVLNHPWMRVDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRVDREDHLYKAFEYFDQDKSGYITTEELKFALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHRRRK. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06697 514 FunFam Calcium-dependent protein kinase 1 330 505 - -
Seca11g06697 514 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Seca11g06697 514 ProSiteProfiles EF-hand calcium-binding domain profile. 437 471 IPR002048 GO:0005509
Seca11g06697 514 Gene3D Phosphorylase Kinase; domain 1 66 149 - -
Seca11g06697 514 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Seca11g06697 514 Gene3D - 330 507 - -
Seca11g06697 514 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Seca11g06697 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 497 - -
Seca11g06697 514 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Seca11g06697 514 SMART efh_1 441 469 IPR002048 GO:0005509
Seca11g06697 514 SMART efh_1 476 504 IPR002048 GO:0005509
Seca11g06697 514 SMART efh_1 369 397 IPR002048 GO:0005509
Seca11g06697 514 SMART efh_1 405 433 IPR002048 GO:0005509
Seca11g06697 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Seca11g06697 514 SMART serkin_6 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06697 514 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Seca11g06697 514 Pfam EF-hand domain pair 370 430 IPR002048 GO:0005509
Seca11g06697 514 Pfam EF-hand domain pair 440 502 IPR002048 GO:0005509
Seca11g06697 514 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Seca11g06697 514 Pfam Protein kinase domain 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06697 514 SUPERFAMILY Protein kinase-like (PK-like) 64 323 IPR011009 -
Seca11g06697 514 FunFam Calcium-dependent protein kinase 1 66 149 - -
Seca11g06697 514 CDD STKc_CAMK 64 321 - -
Seca11g06697 514 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Seca11g06697 514 MobiDBLite consensus disorder prediction 1 52 - -
Seca11g06697 514 ProSiteProfiles Protein kinase domain profile. 64 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06697 514 MobiDBLite consensus disorder prediction 21 44 - -
Seca11g06697 514 FunFam calcium-dependent protein kinase 1 150 329 - -
Seca11g06697 514 SUPERFAMILY EF-hand 361 502 IPR011992 -
Seca11g06697 514 Gene3D Transferase(Phosphotransferase) domain 1 150 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06697 Seca-Chr11 167425991 167430514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06697 50 514 EF-hand Containing Proteins AT4G23650 80.860 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca11g06697 Pkinase 3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06697 K13412 - gmx:100777096 922.539