Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06693 ATGGAACAGAAAAGCCTTCTGATATCAGCACTTAGTGTTGGGGTGGGAGTGGGAGTGGGAATTGGATTGGCTTCTGGACAAAGCGTTGGCAAATGGGGAACTAACACTTTCTCATCAAACGCCATTACTGCTGAAAAGATGGAGCAGGAAATGCTCCGATATGTTGTTGATGGCAGAGAAAGCAATGTCACTTTTGATCAATTCCCATATTATCTCAGTGAGCAGACTCGAGTTTTGCTGACAAGTGCTGCTTATGTCCATTTAAAGCATGCTGATGTTTCTAAATATACACGTAATCTTGCTCCTGCAAGCCGTACTATACTGCTTTCAGGTCCTGCAGAACTATACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTGTTAGATTTAACTGACTTTTCATTGAAGATTCAAAGTAAATATGGTTCATCCAACAAAGAATCTTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGCGGCTATCTGACCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAGGAACCTAAAGGCAAAATGCACAGGCAAAGCAGTGGAGTGGACCTCCAATCAATGGGGGCTGATGCATCTTGCAATCCTCCAAAGCTCCGTAGGAATGCTTCTTCCTCATCAAATATTAGCAGCCTTTCTTTGCAAAACAATTCTACAAATTCAGGATTTCTTATATCCTTAAATCTCCTTTCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGTCTCTTTACATGGTTCTGGTTTTTGTGTCAAAAACCTATCCCATTGTGCTATATCTGCGAGATGTTGATAGATTGTTATACAGATCACAAAGGATATATAACTTGTTCCAGAAAATGTTGAAGAAACTATCTGGACCTATTTTGATTCTTGGTTCAAGAGTTCTAGATTCTTGTAATGACTGGGAAGAGGTTGATGAGAGACTTACTTCACTCTTCCCTTACAACATAGAAATCAGGCCCCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGACATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACTTGGATTCCATCTGTGTGGCAGACACAATGGTTCTCAGCAACTATATAGAAGAGATTATTGTGTCAGCAATTTCTTATCATTTGATGAAAAACAAAGACCTTGAATACAGAAATGGAAAACTCATTATTTCTTCCAATAGTTTATCCCATGCATTGAATATATTCCACAAGGGGAAATGCAGTGGAAGAGATACATCAAAATTGGAAGATCAACCTGTGAAAACTGAGATACAAAAGGGGGAAGGAAGTGTTACAAAACCAGCAGTGAAGTCTGAAAATGCTGCCCCTGTAAAAAAGGCTGAAGCAGAAACATCAACTTCAGTAGTAAAGGCAGATGGTGAAAATTCAGCTCTAGCATCCAAAGCTGCTGAAGTTCCTCCTGATAATGAATTTGAGAAGCGAATAAGGCCTGAGGTTATACCATCAAATGAGATTAATGTCACATTCTCTGACATTGGTGCCTTAGATGAGATCAAAGAATCCCTTCAGGAACTAGTAATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACTGGTAAGACAATGCTAGCAAAGGCCATTGCAAAGGAAGCTGGAGCAAGTTTCATTAATGTGTCCATGTCTACCATCACTTCTAAGTGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTTACACTTGCAGCCAAGGTCTCACCAACTATTATATTTGTGGATGAGGTTGATAGCATGCTTGGGCAAAGGACAAGAGTTGGAGAGCATGAAGCCATGAGGAAAATCAAGAATGAATTTATGTCTCACTGGGATGGACTTATGACAAAACCAGGAGAGCGAATCCTTGTTCTTGCTGCAACTAATAGGCCATTTGACCTGGATGAAGCTATTATTAGGCGATTTGAAAGGAGAATTATGGTAGGACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCCAAGGAAAAGGTGGACAAGGAACTTGAATTTAAGGAACTAGCAATTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCTGCTTATCGACCTGTTAGAGAGTTAATTCAGCAAGAAAGGCTAAAGAATCTGGATAAAAAGCAGAAAGCTGCCAAGGAACAGAATAAAGATGTTCAAGATAGACAAAAAGTACAATATACTGTAGGAAATACCCAAGAAACAGAAGGGGAAGTTCAACAAGAAAGGGTTATTACCCTTAGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAGAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAGTGAGCTGAAGCAATGGAACGAGTTGTATGGAGAAGGTGGTTCAAGAAAGAAACAGCAATTGTCTTACTTCCTATGA 2583 0.4053 MEQKSLLISALSVGVGVGVGIGLASGQSVGKWGTNTFSSNAITAEKMEQEMLRYVVDGRESNVTFDQFPYYLSEQTRVLLTSAAYVHLKHADVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGSSNKESSFKRSTSESTLERLSDLFGSFSIFSQREEPKGKMHRQSSGVDLQSMGADASCNPPKLRRNASSSSNISSLSLQNNSTNSGFLISLNLLSAPLKRTTSWSFDEKLLIQSLYMVLVFVSKTYPIVLYLRDVDRLLYRSQRIYNLFQKMLKKLSGPILILGSRVLDSCNDWEEVDERLTSLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIIVSAISYHLMKNKDLEYRNGKLIISSNSLSHALNIFHKGKCSGRDTSKLEDQPVKTEIQKGEGSVTKPAVKSENAAPVKKAEAETSTSVVKADGENSALASKAAEVPPDNEFEKRIRPEVIPSNEINVTFSDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLAKEKVDKELEFKELAIMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKNLDKKQKAAKEQNKDVQDRQKVQYTVGNTQETEGEVQQERVITLRPLNMQDFKEAKNQVAASFAAEGAGMSELKQWNELYGEGGSRKKQQLSYFL. 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06693 860 MobiDBLite consensus disorder prediction 447 495 - -
Seca11g06693 860 Gene3D - 47 364 IPR027417 -
Seca11g06693 860 SMART AAA_5 568 705 IPR003593 GO:0016887
Seca11g06693 860 MobiDBLite consensus disorder prediction 447 461 - -
Seca11g06693 860 ProSitePatterns AAA-protein family signature. 675 694 IPR003960 GO:0005524|GO:0016887
Seca11g06693 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 769 IPR027417 -
Seca11g06693 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 386 IPR027417 -
Seca11g06693 860 Coils Coil 764 784 - -
Seca11g06693 860 Pfam AAA+ lid domain 727 767 IPR041569 -
Seca11g06693 860 Pfam ATPase family associated with various cellular activities (AAA) 572 702 IPR003959 GO:0005524|GO:0016887
Seca11g06693 860 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 531 706 - -
Seca11g06693 860 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 45 859 - -
Seca11g06693 860 Gene3D - 531 703 IPR027417 -
Seca11g06693 860 Gene3D - 704 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06693 Seca-Chr11 167402013 167407727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06693 532 803 Calmodulin-binding Proteins AT3G56690 35.484 4.26e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06693 - - gmx:100807464 1418.29