Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06678 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTCATCCGATACATTACCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGCCGCTTGAGATGGATTAATTATCTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGACGAGGAGAAATTAATTATAAGCCTTCACGGGGTCGTAGGCAACAGATGGGCACACATTGCAAGCCACTTGCCTGGAAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCCTTCAGGGTCTTCAACCAGCAGCATTACACAGAATAATGTGGATCATTCCCAGTTCAACAACAATTATAACTCTAACAAAGTACTAGATATTCACTTTTCAAACCAAGAGATTAGTAATCTAACAGCAAAGCCACCATCAGTTCAAGAAGCCTTGTTTTCTTCCACATGCCCCTTATTTATGTTTGAGCCTAGTTCACTAGATGGAACAGCAACAGACATCAATAATGTAAGATCAGCAGAACACTTCCAAGTAGATGCTGTTGGTTTGAGCTCTGAAACATGGAACTTTAGCCACCATCAATTCCAGTCACTTCCTCCTCCATCAACAACTTTCACAGTGGACACCACCAATTATCTTCCACCATTGATAGATAATAATAATAATAATGTGGAAAACAAGGTGCCAATTGAGGCGCATTCTTGTAGCATAGAGGAGGAAGGGGATATAGCACTTTTGCAGAGGCAAGATGATCATCAGTTGAATGAATGGGTAGAAACTGATCAGCAACAATGTCCTAACTTTCTTTTTTGGGACAGTGTTGAAGGACAACTTGGTGGGGAAGAATTAGCACCTAATTCATCAAATATGGGAACAATAAACACACTTTCTCCTTTTCCTTCTTCTTTGTGA 987 0.4073 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSGSSTSSITQNNVDHSQFNNNYNSNKVLDIHFSNQEISNLTAKPPSVQEALFSSTCPLFMFEPSSLDGTATDINNVRSAEHFQVDAVGLSSETWNFSHHQFQSLPPPSTTFTVDTTNYLPPLIDNNNNNVENKVPIEAHSCSIEEEGDIALLQRQDDHQLNEWVETDQQQCPNFLFWDSVEGQLGGEELAPNSSNMGTINTLSPFPSSL. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06678 328 CDD SANT 69 112 IPR001005 -
Seca11g06678 328 FunFam Transcription factor MYB26 68 137 - -
Seca11g06678 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca11g06678 328 SMART sant 66 114 IPR001005 -
Seca11g06678 328 SMART sant 13 63 IPR001005 -
Seca11g06678 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca11g06678 328 Gene3D - 6 66 - -
Seca11g06678 328 CDD SANT 17 61 IPR001005 -
Seca11g06678 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca11g06678 328 PANTHER MYB DOMAIN PROTEIN 55 1 249 - -
Seca11g06678 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca11g06678 328 Gene3D - 69 144 - -
Seca11g06678 328 FunFam MYB transcription factor 6 66 - -
Seca11g06678 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca11g06678 328 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca11g06678 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06678 Seca-Chr11 167161579 167163271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06678 1 316 MYB Transcription Factor Family AT1G63910 46.757 7.39e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g06678 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06678 K09422 K02947 gmx:100797787 463.381