Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06677 ATGGCCACAAAAGAGTCAAGCTCTGCTGCTTCTGCTTCAGCTTCAGCTTCAGGGGATGCTAAAATTAAAAGGGTTCTCACACATGGTGGTAGATATGCACAGTATAATGTGTATGGAAACTTGTTTGAGGTGACTTCCAAGTATGTGCCTCCCATTCGCCCAATCGGTAGAGGGGCTTATGGCATCGTATGTGCTGCTGTTAATTCCGATACACATGAACAAGTTGCTATCAAGAAGATTGGTAATGCATTTGACAATATAATTGATGCTAAAAGGACATTGAGAGAAATCAAGCTCCTTCGTCACATGGACCATGAAAATATCATTGCCATCAAGGATATCATACGACCCCCCAAAAAGGAGACCTTTAATGATGTATACATCGTTTATGAATTGATGGACACTGATCTTCATCATATAATTCATTCTGACCAACCTCTTAGAGAAGAACATTGTCAGTACTTCTTATATCAGCTGTTACGGGGCCTGAAATATGTGCACTCAGCTAATGTTTTGCACCGTGATCTTAAGCCCAGTAATTTGCTAATGAATGCGAACTGTAACCTTAAAATTGGGGACTTTGGTTTGGCAAGGACAACATCTGAAACAGATTTCATGACAGAGTATGTTGTCACAAGATGGTACCGAGCCCCAGAATTGCTCCTTAATTGTTCTGAGTACACTTCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGGTGAAATTATGACCAGAGAACCATTGTTTCCTGGGAAAGACTATGTTCATCAACTAAGGCTTATAACAGAGTTAATAGGTTCACCTGACGATGCTAGCCTTGGATTTCTCCGAAGTGATAATGCCAGGAGATATATTAGACAGTTTCAACAATACCGGAAACAAAAATTCTCAGCTAGATTCCCTAACATGATGCCTGAGGCATTGGATCTGTTAGAAAAGATGCTTATCTTTGATCCAAACAAACGCATCACAGTTGATGAGGCACTATGTCACCCATATCTTTCATCACTTCATAACATCGATGATGAGCCAGTCTGTCCAAGGCCATTCAGTTTTGATTTTGATCAGCCAACATGCACTGAAGAGCACATCAAGGAGCTTATCTGGAAGGAATCAGTGAAGTTCAATCCTGATCCACCCTGTCAGTAA 1152 0.4071 MATKESSSAASASASASGDAKIKRVLTHGGRYAQYNVYGNLFEVTSKYVPPIRPIGRGAYGIVCAAVNSDTHEQVAIKKIGNAFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPKKETFNDVYIVYELMDTDLHHIIHSDQPLREEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCNLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTSAIDVWSVGCIFGEIMTREPLFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYIRQFQQYRKQKFSARFPNMMPEALDLLEKMLIFDPNKRITVDEALCHPYLSSLHNIDDEPVCPRPFSFDFDQPTCTEEHIKELIWKESVKFNPDPPCQ. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06677 383 SMART serkin_6 49 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06677 383 FunFam Mitogen-activated protein kinase 34 144 - -
Seca11g06677 383 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 47 336 - -
Seca11g06677 383 ProSiteProfiles Protein kinase domain profile. 49 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06677 383 Gene3D Phosphorylase Kinase; domain 1 32 372 - -
Seca11g06677 383 Pfam Protein kinase domain 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g06677 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca11g06677 383 FunFam Mitogen-activated protein kinase 133 362 - -
Seca11g06677 383 Gene3D Transferase(Phosphotransferase) domain 1 133 362 - -
Seca11g06677 383 SUPERFAMILY Protein kinase-like (PK-like) 52 343 IPR011009 -
Seca11g06677 383 CDD STKc_TEY_MAPK 42 378 - -
Seca11g06677 383 ProSitePatterns MAP kinase signature. 84 187 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca11g06677 383 ProSitePatterns Protein kinases ATP-binding region signature. 55 79 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06677 Seca-Chr11 167151858 167156485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06677 8 378 MAP Kinase Gene Family AT4G01370 80.323 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca11g06677 Pkinase 7.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06677 - K20600 tpra:123916746 738.413