Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06674 ATGAATGAGTCTTCCACCAATTTCTATCACCAACATGAGATTTCTGAGACAAGTGGTGAGAATCTAATAGTCGGTGCCCATGATTCTGTTTCTGCCCCGTGGCAGGAAAACAGATTACTTGTAGATGATTCTTCTTTCAGCAGGTGTGTGTTTCCTTGTGAAGGTAACGAAAGACCAAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACAAACCCTTCAAGTATTGGGTTGCAGTCTTTTGAGCTAAGACACACCAAACAAATGTTGCAAAATGTTTATCAAGGACATTTCGTGCTCAAGAACTCCAAGTTCTTGGTTCCTGCACAGGATCTGCTAAACGAGTTTTGTAGTCTAGGGACAAAGCAAAATGATGTACTACTACTACCAAAGCAAAAGTCTCAGAAGAACAAACAGTGGGAAGAGGACAATTCGTCAAGGAAGCATTGTGTTAGCTCTCTAGAGTTTGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTATATATGTTTTTTTCTCTTGTACTTAAGGTTGAGAGAAGATACAGGCACTACTGTAACCAGATGAAGACTGTGGTCTCTTCCTTTGAAGCAGTAGCTGGTAATGGTGCTGCCAAGGTGTACTCAGCTTTAGCTCTGAAAGCCATGTCAAAACATTTCAGGTGTTTGAAAGATGGGATTTTGGATCAGATTGAGGCAACAAGGAAAGGCATGGGAGAGAGAGACCCAATTGCACCAGGAACAAGCAGGGGAGAAACACCAAGGCTTAAAGTGATTGACCAAGCACTGAGACAACAGAGAGCTTTCCAGCAACTCAACATGATGGAAACCCATCCTTGGAGACCTCAACGCGGCCTTCCTGAACGATCCGTTTCCGTTCTTCGGGCTTGGCTTTTTGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATTTTAGCCCGCCAAACTGGTCTCTCCCGAAGCCAGGTTTCAAATTGGTTTATCAACGCAAGGGTGAGGCTATGGAAGCCAATGGTGGAGCAAATGTACTTGGAAGAAGAGAAGGAAGAAAACAACAACATTTCATCCTCCGATAATGGAGGCAACAATATTATTCATGAAGACGATAACATATCTCCTTCAATCAGATCTGAGGATCAGAAGCCAACACAGTCTCGACTTCTTCGAATTGACTCAGAGTGTGTGTCGTCCATAATCAATACTAACAACTCATCAGATCATAAAAACGACCCAAAGAACATCAAAACGATGCACATGAATCCTCAGGAAGACACATTTGGATCGGTTGATATTGATTTTTCATCTTATCCGCATTTTGCAAGTAATGATCACAACGTCAATAGTCAGAATTTCCACGGTGGCGGTGGAGTGTCATTGACGCTAGGGTTACAGCAACACGGTGGTAGCGGTGTGAGCATAGCGTTCCCCTCAGCAACAGAGTTTTACACAAGCAGGGATCAGCACATGGAAGAGTGTCAACCAATTCATCACTATTCTCTTTTGGATGGAGAAGGACAGAATATGCCGTACCGGAATCTGATGGGGACACAGTTGCTTCATGACTTGGCTTGA 1593 0.4357 MNESSTNFYHQHEISETSGENLIVGAHDSVSAPWQENRLLVDDSSFSRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRHTKQMLQNVYQGHFVLKNSKFLVPAQDLLNEFCSLGTKQNDVLLLPKQKSQKNKQWEEDNSSRKHCVSSLEFVELQKRKTKLLSMLEEVYMFFSLVLKVERRYRHYCNQMKTVVSSFEAVAGNGAAKVYSALALKAMSKHFRCLKDGILDQIEATRKGMGERDPIAPGTSRGETPRLKVIDQALRQQRAFQQLNMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEQMYLEEEKEENNNISSSDNGGNNIIHEDDNISPSIRSEDQKPTQSRLLRIDSECVSSIINTNNSSDHKNDPKNIKTMHMNPQEDTFGSVDIDFSSYPHFASNDHNVNSQNFHGGGGVSLTLGLQQHGGSGVSIAFPSATEFYTSRDQHMEECQPIHHYSLLDGEGQNMPYRNLMGTQLLHDLA. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06674 530 Gene3D - 287 349 - -
Seca11g06674 530 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 366 - -
Seca11g06674 530 CDD homeodomain 284 345 IPR001356 GO:0003677
Seca11g06674 530 Pfam Associated with HOX 98 231 IPR006563 -
Seca11g06674 530 MobiDBLite consensus disorder prediction 361 392 - -
Seca11g06674 530 SUPERFAMILY Homeodomain-like 285 350 IPR009057 -
Seca11g06674 530 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Seca11g06674 530 MobiDBLite consensus disorder prediction 353 392 - -
Seca11g06674 530 SMART prehox3 93 233 IPR006563 -
Seca11g06674 530 SMART HOX_1 284 348 IPR001356 GO:0003677
Seca11g06674 530 FunFam BEL1-like homeodomain protein 4 287 349 - -
Seca11g06674 530 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06674 Seca-Chr11 167098607 167101419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06674 7 530 Homeobox Transcription Factor Family AT5G41410 44.279 1.00e-128 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca11g06674 POX 9.2e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06674 - - lang:109331282 655.981