Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06672 ATGGGATTTCCCGTGGGCTATACAGAGCTTCTCTTCCCAAAACTGGTTCTTCACATCTTCTCCCTCTTGGGTTTCATCAGGAAACTCATTTCCATCCTTTTCCGCTATCTGGGTCTCCACGATTTCCTCGAACCCGACATTGCATGGCCCGATGGGTCGACCCGGACACCCGAATTCGATTCCGTTTCCGCGCTCTTGATCCGGGAATTCCTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGACCCACCCGAAAGCTGCGCCGTCTGTCTGAGCGAGTTCGACGAAAACGATGAGATCAGACGGCTGACGAACTGTCGACACATCTTCCATCGAGGTTGTCTGGACCGTTGGATGGGTTACGATCAGAGAACGTGCCCTTTGTGCCGAACACCCTTCATACCCGACGAAATGCAAGGTGCTTTCAATGAGAGACTCTGGGCTGCTTCTGGAATCCCTGAATTTCCTCATCATCTTCCTGCTTCTACTTTCTAG 492 0.5285 MGFPVGYTELLFPKLVLHIFSLLGFIRKLISILFRYLGLHDFLEPDIAWPDGSTRTPEFDSVSALLIREFLPVVKFRELVDPPESCAVCLSEFDENDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDEMQGAFNERLWAASGIPEFPHHLPASTF. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06672 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Seca11g06672 163 SUPERFAMILY RING/U-box 66 135 - -
Seca11g06672 163 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Seca11g06672 163 SMART ringv_2 85 129 IPR011016 GO:0008270
Seca11g06672 163 CDD RING-H2_RHA1-like 86 132 - -
Seca11g06672 163 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 149 - -
Seca11g06672 163 SMART ring_2 86 128 IPR001841 -
Seca11g06672 163 Pfam Ring finger domain 85 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06672 Seca-Chr11 167048884 167049375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06672 1 150 C3H Transcription Factor Family AT1G63840 60.000 7.96e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06672 K16281 - gmx:100817079 273.863