Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06666 ATGGAAGGATGGTCAACTTTATCAAATGGGTATTCCTTAGATTGCCTTGGAGTTGAAACTGTTGGGGCATTTCATGGTAACGGTTGTTGCCTTGTAAAAGATCATGTAGATAGTGCTGACCATGACAAAGCTAAACAAAAATGTTTGTTTTATCAACTTTTCGCTGTTTACCTAAAGGAGAATTGTTCTAGAGGCAATGTTCGGCCTGTGCCAGTTTTGCTCGGTGATGGTCAATTGCTAGATTTGTACAAACTGTTCTACCTTGTGAAGGAAAGAGGCGGGTATGCTGTGGTGTCGAGAAAAGGATTGTGGGGCTATGTGACAAAGGAATTGGATTTGAACCTTCAAGTTTTGGCTTCGGTGAAATTAGTTTATGATAAGTATCTGACTGATTTTGAAGGATGGCTCAGGGAAACTTTTGAAGGGAATAATTTCAAAAATGGGAATAACAGGTGTGATTGGGGTTCTAAGTCGTTGCCATTAGATCTAGCTGGGGAGTTTAGAGGCCTATTATGCTCAAATGTAAAGGACAAAGATGATGAACTTGTCCAGTTAGAACCAAATAAAATTATAAAGTACATTGATTTGGTTAACCACAAGAGTGATACTAATTTGTTGGACACCAAAAATCAAAATAACAAATGTGAGGATGCCCAACATCCTGATGGCGATGATGATGAAAAACTCAGTAATGGTATTGAGGATGATCTTGCTACCTCGGTCGCGGAAATTGCTGAGAAGGAATTTAACTCTCGCAAACGCAAAAGGGAGGCATTATCAGGAATGCTAAACTGGATGAAACATATTGCAAAGCATCCTCTTCATCCTTTAACCCAGTCAATACCAAAACCATCAAAGTGGAAGGAGTATAAAGGACAGGACTCTTTTGTTCAGATACTGAGGGCAAGAGAGGTTCTGTTGCTGAGACAGCATGTAGAACCAAACAGTGGATCATCTTCTTCGCAGAAGCTGAAGATGCATCCTGCCATGTATGAGGATCATGTTCCTGTTGGTCACCATGGAACAGTGAAATTGAGATGCAGTGAGAGGCTGCCTACCTCTGTTAAATCTCGTTTGTGCTCTTGCTGCAATTCCTGTTCAGACAATGGAAATAAATTGGAAAGTTCAGTCAATATGGAGACAGAAAAATGTCCTCAGGAGAACAAAACTGTAACACCAGATTCAGTGACTGAAAAGATAATAGCTGACCCATCCGAGGATGAATTACTCGAAAAGAAGCAAGTTTCTATAGGTCCTCTTTTCCAAGCAGAAGTCCCGCAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTAGGCACACAGGTATGGCCTTTGAAACATGACTCAAAACATGCTACTGAAACAGATCTTATTGGGAGAGGAAAACAAGGAAAATGTAGCTGCCAAGTTCAAGGTTCTGTTGAGTGTGTCAGATTTCACATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGTATTTTACCATTGGGGATTTGATCGCATGGGTGAGGAAGTTTCACTTCAATGGACAGCTGAAGAAGAAAAGAAATTTAAGGATATTATGAAGTCAAATATACCCTCCCAAAATAGGTTTTTTTGGAACAATTCATCCAAATACTTCCCAAAGAAGACAAGAAAAAACTTGGTGAGCTATTACTTCAATGTATTTCTTATTCAACTAAGAAGCTATCAGAATCGTGTTACTCCAAATAGTGTTGATAGTGATGATGATGAAGTAGAATTTGGATCTTGTGGTGATGGTTTTGGGATGGAAGCTATCAAGGATCCAGGTATTAATTTCCTAGTGTGTTCAGAGAACAAGCAGTGCACTGATTTTGAGTAG 1857 0.3953 MEGWSTLSNGYSLDCLGVETVGAFHGNGCCLVKDHVDSADHDKAKQKCLFYQLFAVYLKENCSRGNVRPVPVLLGDGQLLDLYKLFYLVKERGGYAVVSRKGLWGYVTKELDLNLQVLASVKLVYDKYLTDFEGWLRETFEGNNFKNGNNRCDWGSKSLPLDLAGEFRGLLCSNVKDKDDELVQLEPNKIIKYIDLVNHKSDTNLLDTKNQNNKCEDAQHPDGDDDEKLSNGIEDDLATSVAEIAEKEFNSRKRKREALSGMLNWMKHIAKHPLHPLTQSIPKPSKWKEYKGQDSFVQILRAREVLLLRQHVEPNSGSSSSQKLKMHPAMYEDHVPVGHHGTVKLRCSERLPTSVKSRLCSCCNSCSDNGNKLESSVNMETEKCPQENKTVTPDSVTEKIIADPSEDELLEKKQVSIGPLFQAEVPQWTGVVSESDSKWLGTQVWPLKHDSKHATETDLIGRGKQGKCSCQVQGSVECVRFHIAENRMKLKLELGSVFYHWGFDRMGEEVSLQWTAEEEKKFKDIMKSNIPSQNRFFWNNSSKYFPKKTRKNLVSYYFNVFLIQLRSYQNRVTPNSVDSDDDEVEFGSCGDGFGMEAIKDPGINFLVCSENKQCTDFE. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06666 618 CDD SANT 514 561 IPR001005 -
Seca11g06666 618 CDD ARID 50 133 - -
Seca11g06666 618 Gene3D - 32 145 IPR036431 GO:0003677
Seca11g06666 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 38 615 - -
Seca11g06666 618 SUPERFAMILY ARID-like 44 138 IPR036431 GO:0003677
Seca11g06666 618 SMART bright_3 45 138 IPR001606 GO:0003677
Seca11g06666 618 ProSiteProfiles ARID domain profile. 44 137 IPR001606 GO:0003677
Seca11g06666 618 MobiDBLite consensus disorder prediction 209 228 - -
Seca11g06666 618 SMART ARID_2 41 133 - -
Seca11g06666 618 MobiDBLite consensus disorder prediction 213 227 - -
Seca11g06666 618 Pfam ARID/BRIGHT DNA binding domain 53 133 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06666 Seca-Chr11 166990967 166999489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca11g06666 ARID 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06666 - - gmx:100819320 895.575