Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06654 ATGGAAAGCAAGGAGGAAGATGTTAAGCTTGGAGCAAACAAATTCTCAGAAAGGCAACCATTGGGGACAGCAGCTCAGGGTGACAAGGACTACAAGGAGCCACCCCCAGCTCCTCTTTTTGAGCCTGGGGAGCTAAAGTCATGGTCTTTTTACAGAGCTGGCATTGCTGAGTTCATGGCCACCTTCCTGTTCCTCTACATCACCATCTTGACTGTGATGGGTGCCAACAGGTCATCCAGCAAGTGTTCCTCTGTTGGAATTCAGGGTATTGCCTGGTCTTTTGGTGGTATGATCTTTGCCCTTGTGTACTGCACTGCTGGAATTTCAGGTGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTCTCCCTTACAAGAGCTCTATTCTACATTATCATGCAATGTCTTGGAGCAATCTGTGGTGCTGGTGTGGTTAAGGGCTTTGAGGGTAATGCTAGATATGAGTTGTTCAAAGGTGGAGCAAATTTTGTAAATCCTGGATACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTTTTTTCTGCCACTGATGCCAAGAGAAACGCTAGGGACTCTCATGTTCCTATTTTGGCTCCCCTTCCCATTGGGTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCTATCATCTTCAACAGGGACTTAGCATGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCTCTTGCTGCTTTGTATCACCAGATAGTTATCCGAGCCATTCCTTTTAAGACAAGGGCTTAA 864 0.4722 MESKEEDVKLGANKFSERQPLGTAAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITILTVMGANRSSSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNARYELFKGGANFVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDLAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKTRA. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06654 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Seca11g06654 287 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g06654 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 12 282 IPR034294 -
Seca11g06654 287 NCBIfam MIP family channel protein 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Seca11g06654 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca11g06654 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Seca11g06654 287 FunFam Probable aquaporin PIP1-2 37 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06654 Seca-Chr11 166899828 166901551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06654 1 287 Major Intrinsic Protein MIP AT3G61430 84.669 5.50e-174 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06654 K09872 - gmx:121174914 557.755