Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06650 ATGATAGGTTGTGGCTGGAAAATGGTGCAAGACAACATGAAGAAACAACTTGCTTTGGCTTTGAGAAGCATCCAGTGGAGCTATGCAATTTTCTGGTCTGATTCAGCTAACCAACCAGGCAGGGTATTGAGTTGGAGGGAAGGGTATTATAATGGAGATATTAAGACTAGGAAAACAAGTCAAGGAGTAGAACTTAATTCTGATCAAATTGGGTTGCAAAGGAGTGAACAGTTGCGAGAGCTATTCAAGTCTCTCAAAACTGCAGAAATCAACCCACAACCAAAAAAGCCTTCAGCGACTCTATCCCCTGAAGATCTCACAGATACAGAGTGGTATTATTTGGTTTGTATGTCCTTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCTAGTGGCCAACCCATTTGGCTGAACAATGCTTCTTCCATTGATTGCAAAATTTTTAGTCGCTCTCTTTTGGCAAAGAGTGGATCCATTCAGACAGTGGTGTGTTTTCCTTTTATGGAAGGGGTTATTGAGCTAGGTACAACTGAGCAGGTCTCAGAAGATCTGAGTCTCATTCAACGGATCAAAACTTCTTTCTTGAATAATCTGCATGCCAATGATCCTATTAAGTCTGGAGCTACATTGAAATCAAGGAATGAGGAAGGTGTTGATTGTGTAGCATTTGATCATAATGCTTATAATGTTGAATTAATTCCAGAAGTTGGATATGGTGTAATCAACACAACAACCTCTCCTAATGGTAGTTCAAATGCATTACAAGTCAATCAACCACCAGATGAAACATTCATGGTTGAAAGCATAAACCATGGCACCTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGCAATGGTGTCCATAACTCCATGAATTCTAGTGACTGTATATCACAATGTTTTGCCAGTCCTGAGAAGATAGCTTCTGCTCCCAAGGGCGGTACTCATTCTTTTGACCCTTGCACCCAAGACCTTGAAAAGTGCAATAACCCAAAAATGACCTTAGTGGATCCTCGAAGTGATGATTGGCATTATCAGAGAGTTCTTTCTGCCCTTTTGAAAAGCTCAGACCAGTTAATGATGGGGATGCATTTTCAAAACTTTCATCAGGAATCAACCTTTTCTAGTTGGAAGAAAGGAGTGTCAATGTATTGCCAAAGGCCAAGAGCAGGAACCTCACAAAACTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCACATGGATGGGTTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAAGACTAGAGGCTGATGAAATTGGTATGAACCACGTTTTGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATTGAATATCTTAAAAAGCTTGAGAAAAGGGTAAGAGAGTTAGAAGCTAAGAAAGAACTAATAGATATAGAGAGTAGGAGTAAAAAATCATCTCATGATATGGGGGAGAGGACTTCTGATCATTATTTTAACAAAGATAATAATGGCAAGAAACCAGTGGTAAAAAAGAGGAAAGTCTGTGACATAGAGGAGGCAGGGAGAGAGATTAATTCAGATGCTTTAAGAGGCAGTTCTACAAATGATGTTACTGTCAGTATAAGTGACAATGAAGTTGTGATAGAAATGAGGTGCCCTTGCAGAGCAGGAAGGTTGTTGGAAATTATAGAAGCAGTTAACAGTCTCAATATAGACATAGATTTTAATTCAGTTCAGTCAACAGAAGCTGATGGGAATCTTTATCTGACCATTAAATCTAAGTTCACAGGACCAACTAATGCAACAGCAAAAAGGATCAAACAAACACTCCAAAAAGTGGTTTCCAAGTGTTGA 1926 0.391 MIGCGWKMVQDNMKKQLALALRSIQWSYAIFWSDSANQPGRVLSWREGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTAEINPQPKKPSATLSPEDLTDTEWYYLVCMSFVFNIGQGLPGRALASGQPIWLNNASSIDCKIFSRSLLAKSGSIQTVVCFPFMEGVIELGTTEQVSEDLSLIQRIKTSFLNNLHANDPIKSGATLKSRNEEGVDCVAFDHNAYNVELIPEVGYGVINTTTSPNGSSNALQVNQPPDETFMVESINHGTSQVQNWQVIDDELSNGVHNSMNSSDCISQCFASPEKIASAPKGGTHSFDPCTQDLEKCNNPKMTLVDPRSDDWHYQRVLSALLKSSDQLMMGMHFQNFHQESTFSSWKKGVSMYCQRPRAGTSQNLLKKVLFEVPRMHMDGLLESQEENDYKEGTRLEADEIGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLKKLEKRVRELEAKKELIDIESRSKKSSHDMGERTSDHYFNKDNNGKKPVVKKRKVCDIEEAGREINSDALRGSSTNDVTVSISDNEVVIEMRCPCRAGRLLEIIEAVNSLNIDIDFNSVQSTEADGNLYLTIKSKFTGPTNATAKRIKQTLQKVVSKC. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06650 641 MobiDBLite consensus disorder prediction 505 527 - -
Seca11g06650 641 Gene3D - 436 498 IPR036638 GO:0046983
Seca11g06650 641 Coils Coil 476 503 - -
Seca11g06650 641 PANTHER TRANSCRIPTION FACTOR TT8 10 639 - -
Seca11g06650 641 Pfam Helix-loop-helix DNA-binding domain 441 487 IPR011598 GO:0046983
Seca11g06650 641 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 14 197 IPR025610 -
Seca11g06650 641 SMART finulus 443 492 IPR011598 GO:0046983
Seca11g06650 641 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 437 486 IPR011598 GO:0046983
Seca11g06650 641 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 439 500 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06650 Seca-Chr11 166853933 166857602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06650 9 641 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.884 1.99e-172 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g06650 bHLH-MYC_N 2.1e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06650 - - gmx:100808167 966.837