Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06646 ATGTCTGGATGCAATAAATCACCTAAACATGATCAACATTCAATCAAATATTGGGGGATTCAACATGGGGGGGCATCCTTTCAGGCTGATCTTTCTTGTGTACAGTATTCACCTTCTCTTTCCCATAATGAGAATAAGCAAAAGCAATGCTGCAGAAGTTCTCAACAGAAGTCCCCAGAGATACTGAGCACTGCTCAGCTTATCTCTGCAATATGCCAGATATGGGATTCTGCAAGTCGCCCACTTTCATTTTTGCTCCTGAAGAAAAATGGGAATCAAGATGATAAAGGACTCCCCAAAGAGAAAATTCTGGATAGCATTGATGAGAAAAGGAAAAATGTGGTTACTTCAAATAAGGCTAATTATTATCCTGTTAATATGGAGCCTACTGGCTTTGGTTCACAGATTGTGCAGGAAAAATTGCATTTCCCTAAGGTAACACAAAAGATGTTAGTACTTGAATCTTCTAATGAAAGTCAAGATTATATTTATTCTTTATTCCAGAGATTTTTGCTGGCCAGTAATAAAAATCCAAACAAATATTGGAAAGAAATGGAACTTGGGAGTGAGGAAATCTCATTTAGATCAGGAAATGGATATTGGCGGATGAGTAGGAATGCTCCTAAAGGGCTAAACTGTCATGCAAAGGTTACTGAGCCTGAGGATCTGAAAACCGATTCTCTGGTTGCTGGGGGCTGTATTTCAACAGGGACAAGCACCCCTGCATTGCCTGATGAGAGTGATGTGTACTGTCCTGATTTTGTCATACATGAAGCTCAACAATTATCTAATGATGCAATTCTGGACCACAGAAAAGTTAGCCCTCTGTGTTCAGACTATTTTCTTCAAGCTATGCCTGATACTAAGGAAGATGTTAGTGCTTGTCAGACCCTAAGTTCTAGTATCTACGCAGACTATCATATCAACTCCTTAGCTGCCTGTAGTAGTGCTTCTGTGCAATGCCAACACAACATTGATGATAATGAATTGCCGGAAATCCAAAGAAAACATTTCTCGGAAATAAGTGATCATGAGCCTAAGGTTCAGATATTCTCTGAAACCCATCAGAAGCCTTGTCATTTCCTTGCTAAGCAAGAACATGCTTTTTCTGGGGCATTGGCTGGAATATGTGTCAGCCTTTGTTTGCATCCCTTTGACACAATTAAGACAGTCATTCAATCATGCCGAGCAGAACATAGGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGGTTTGCCTGCACTATATCGTGGAATTACTACAAACATTGCATCCTCAGCTCCAATTTCTGCAGTTTATACTTTCACCTACGAATCAGTTAAAGCAGCTTTGCTTCCTTACCTTCCAAAGGAGTATTACTCTTTTGCCCATTGTGTAGGAGGTGGTTGTGCAAGCATTGCCACTTCTTTCATTTTTACTCCTAGTGAGCATATAAAACAGCAGATGCAAGTTAGATCTCATTATCGCAACTGCTGGGATGTATTAGTTGGGATTATCAGAAAGGGTGGTTTTTCCTCCCTATATGCAGGTTGGGGAGCTGTACTGTGCCGGAATATTCCACATTCAATTGTCAAGTTTTACACATATGAAAGCTTGAAGCAAGCGATGCCATCTAATATTCAGTCCAACACGTTTCAAACTTTAGTGTGTGGAGGATTAGCTGGATCTACCGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGGTTTGTAATAAACAAATCAAAGTGAGTGCACTGCAGATTCCTGGATCTATGAATCAATATGATAGTGTGCTCCATGCCCTTTACAAAATTAGCAAAAGTGAAGGTTTGAAGGGCCTATACAGGGGGTTGACTCCACGGTTGATTATGTACATGTCTCAAGGATCACTGTTCTTTGCTTCATATGAATTTTTCAAGAGGGTATTTTCTCTGGAAGCATCACCTCCCACTGATAACAAAAATGTTGAAAACAGAAAAAATTTAGAATTGACAAGTCCATCATTCATCAGGAGTTGCAGCAGAAGCATCCCCAAGCCTTGA 2052 0.3991 MSGCNKSPKHDQHSIKYWGIQHGGASFQADLSCVQYSPSLSHNENKQKQCCRSSQQKSPEILSTAQLISAICQIWDSASRPLSFLLLKKNGNQDDKGLPKEKILDSIDEKRKNVVTSNKANYYPVNMEPTGFGSQIVQEKLHFPKVTQKMLVLESSNESQDYIYSLFQRFLLASNKNPNKYWKEMELGSEEISFRSGNGYWRMSRNAPKGLNCHAKVTEPEDLKTDSLVAGGCISTGTSTPALPDESDVYCPDFVIHEAQQLSNDAILDHRKVSPLCSDYFLQAMPDTKEDVSACQTLSSSIYADYHINSLAACSSASVQCQHNIDDNELPEIQRKHFSEISDHEPKVQIFSETHQKPCHFLAKQEHAFSGALAGICVSLCLHPFDTIKTVIQSCRAEHRSIFYIGKSIVSDRGLPALYRGITTNIASSAPISAVYTFTYESVKAALLPYLPKEYYSFAHCVGGGCASIATSFIFTPSEHIKQQMQVRSHYRNCWDVLVGIIRKGGFSSLYAGWGAVLCRNIPHSIVKFYTYESLKQAMPSNIQSNTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQVCNKQIKVSALQIPGSMNQYDSVLHALYKISKSEGLKGLYRGLTPRLIMYMSQGSLFFASYEFFKRVFSLEASPPTDNKNVENRKNLELTSPSFIRSCSRSIPKP. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06646 683 ProSiteProfiles Solute carrier (Solcar) repeat profile. 545 645 IPR018108 -
Seca11g06646 683 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 342 656 - -
Seca11g06646 683 ProSiteProfiles Solute carrier (Solcar) repeat profile. 455 538 IPR018108 -
Seca11g06646 683 ProSiteProfiles Solute carrier (Solcar) repeat profile. 362 446 IPR018108 -
Seca11g06646 683 SUPERFAMILY Mitochondrial carrier 365 642 IPR023395 -
Seca11g06646 683 Gene3D Mitochondrial carrier domain 456 680 IPR023395 -
Seca11g06646 683 Gene3D Mitochondrial carrier domain 335 455 IPR023395 -
Seca11g06646 683 FunFam Mitochondrial substrate carrier protein-like 488 659 - -
Seca11g06646 683 Pfam Mitochondrial carrier protein 366 447 IPR018108 -
Seca11g06646 683 Pfam Mitochondrial carrier protein 546 647 IPR018108 -
Seca11g06646 683 Pfam Mitochondrial carrier protein 456 539 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06646 Seca-Chr11 166825545 166830298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06646 462 652 Chloroplast and Mitochondria Gene Families AT1G07030 24.257 1.39e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06646 - - gmx:100812271 944.88