Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06634 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGCTCTGCTCCATATTACATACATAGAGGAGGGATTGCAGGGTCTGGCTCTGGGACACAGACAGGGGGATTGGGGTTTCAAGGACCCCCTGGGTTCAGAGTTTTGCCAAACACTGGTATTCCCGCTCAGTCAAATGCCCGGGCTCAGGGTGGTTCTGTTGGTTCTAATGCCACATTTTCAGTAGAGCCTCAGGCTCGTGCTAGTTATAATCATGACATTAGCATTGGTGCCTCTTCTGGGACACCTTCAGCCTCAGTTGAACCTCCTGTGAAAAAGAAAAGAGGGAGACCTCGGAAATATGGTCCTGATGGGCCAGTTTCTTTGAGACTGTCTCCAATGTCTGCTCCTGCTAATTCTACCCAGGGTTCAACCACACCTTCCCAGAAACGGGGTAGAGGGCGCCCTCCTGGATCTGGAAGGAAGCAACAGCTAGCCGCATTAGGTGAATGGATGAATAGTTCAGCAGGGCTGGCCTTTTCCCCTCATGTTATCACCATTGACGTTGGGGAGGACATTGTAGCAAAGTTATTGTCATTATCACAGCAGAGACCAAGGGCTCTATGCATCATGTCAGCCAATGGGACAGTTTCTAAAGTTACTCTGAGACAGCCTGCTTCTACCATTACCAGTTTTACTTATGAGGGGCGATTCCAAATATTATGCTTGTCTGGTTCCTACTTGGTTGCTGAAGATGGTGGACCCTCCAATAGAACAGGTGGCATAAGTGTTTCCCTGTCTAGCCCGGATGGTCAAGTGATTGGTGGCGGCGCTGCCATGCTTATAGCTGGAAGCTCAGTGCAGGTGGTGGTGTGCAGTTTTGTATATGGTGGCTCTTCCAAGACAAAGACTAAGCAAGGGAGCAGTAGCAAAGATGAAAGTTGTGAGCCTCAGCATAGTGACAAGTTAGCTTCTCCAGCCAGTGCTCCTCCTCCACCTAGTCAAAACTACATGTCTTCTGCAACAGGTGTTTGGCCTGGATCACGACCAGAGCTGAAAAGCCCTCATGCACACACTGGCATTGACTTGACTCGAGGGTGA 1071 0.4977 MDGREAMAFSGGSAPYYIHRGGIAGSGSGTQTGGLGFQGPPGFRVLPNTGIPAQSNARAQGGSVGSNATFSVEPQARASYNHDISIGASSGTPSASVEPPVKKKRGRPRKYGPDGPVSLRLSPMSAPANSTQGSTTPSQKRGRGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVITIDVGEDIVAKLLSLSQQRPRALCIMSANGTVSKVTLRQPASTITSFTYEGRFQILCLSGSYLVAEDGGPSNRTGGISVSLSSPDGQVIGGGAAMLIAGSSVQVVVCSFVYGGSSKTKTKQGSSSKDESCEPQHSDKLASPASAPPPPSQNYMSSATGVWPGSRPELKSPHAHTGIDLTRG. 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06634 356 SMART AT_hook_2 102 114 IPR017956 GO:0003677
Seca11g06634 356 SMART AT_hook_2 140 152 IPR017956 GO:0003677
Seca11g06634 356 MobiDBLite consensus disorder prediction 21 68 - -
Seca11g06634 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 75 323 IPR039605 GO:0003680
Seca11g06634 356 Gene3D - 172 299 - -
Seca11g06634 356 CDD DUF296 172 284 IPR005175 -
Seca11g06634 356 ProSiteProfiles PPC domain profile profile. 164 308 IPR005175 -
Seca11g06634 356 MobiDBLite consensus disorder prediction 49 68 - -
Seca11g06634 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 169 286 - -
Seca11g06634 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 285 IPR005175 -
Seca11g06634 356 MobiDBLite consensus disorder prediction 84 154 - -
Seca11g06634 356 MobiDBLite consensus disorder prediction 123 142 - -
Seca11g06634 356 MobiDBLite consensus disorder prediction 289 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06634 Seca-Chr11 166719035 166723005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06634 1 356 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.100 1.07e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06634 - - gmx:100798706 471.085