Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06621 ATGTCGCGCAAAGTGAATTTTGTTGGAGAAATTGATCGAACCAAAGAATCATGGAAGTTGGCTGTTAGAGTGACCAATGTTTGGCGTTCAGAAAATTACATGGATGTGATTTTCATGGATGAGAAGGGAGGAAAAATACATGCATCATTGAATGAATCAGATTTGCGGAAATTAAATGTTGTCATAGAAGAGCGTAACACTTACAGTATTAAAAACTTGGAAGTCAAAGAGAATACTGGTAAGTATAAGTTATGCAACCACCTATACAAGGTTGGATTCATGAAAGGAACCAATGTTCGACAAGTTGATTTCCCGCAAATTCCTCTAAATGTGTTCCAATTTACAAGCTTTGAGGATATAATCAAAGGAAATGCTTCCACTGATGTGTTAATAGATGTAATTGGAGAGTTCATTGACATTCAACAACATATCGATGAAAGCATACCCAGGAAATTGGTTGTGGTCATGAAGGATCAAAGTGGCCACACTATAAGCTGGACTTTGTGGGAGGAGTATGAAAGCCAGGTTTTCTCTTTTCTAGGAACACATGAAGGTGGCCCAATCATCATGCTACTTAGTCTTGCCCTAATAAAAGAAGCTAAGGGAAACTCCCCAGTTACTGTTCAAAATACAAAGGTTCACTCAAGGCTATACATCAATGAAGACATTGATGAGATCAATAAATTCAAAAGCAGCTTGGACTCAACTCATGTGTATGAGTCATACAGTCAAAAACTGAGTCAGTTGTCTTCGTCAAGTCATGTTACCCAAGGAGAAACATTTATTCAAGATGCAAATGTCATGAGTTTAGCTAAAATCAATGAGACCCAAGAGGAAATATTTTGCCTCACTGTTGGGAAAATAGAGATGATATATGTTAGCAATGGTTGGCAATATGATGCATGTGTTAAGTGTAGCAAGAAACTGGAGTCTGAAACTGAGCCATTTATATGTGCAAGGTGTGGAAAGCTAAACTCTGAACGAGTTCCTAGGTTCAGGTTAGAGGTAAAAGTTTCTGACAAGAATGCGCATTCAAAGTTCATTCTATGGGATAAGCATTGTGTCCAACTGTTGAACCAGAGTGCTCTGGATCTTAAGAAGCAAATGATCCAGGAGGAAGGAGTCTTTGATCCAATGGAACTCCCTGGACCCATAGATTCTATTCTAGGCAAGGTTCTTGCTTTCAAGATTAAGATCCAACTAAAGTACAAAGGTTATTCAGTTCACCAAATCTCTGAAGATCCACAAATTATTGAATCAATCATTGGGTCAATTAAAAAGAATGAGGGTGCTGGGAAGATTGAGAAAGGAAAACTTGTCTGCTCAGGTGTTAATGAAGTTGATTACATGGACAGTGTAAGTAATTTTCATGTAAATTCACCAAAGCAATATTGTTATACAAAACCTGTCTACTTTTAA 1419 0.3756 MSRKVNFVGEIDRTKESWKLAVRVTNVWRSENYMDVIFMDEKGGKIHASLNESDLRKLNVVIEERNTYSIKNLEVKENTGKYKLCNHLYKVGFMKGTNVRQVDFPQIPLNVFQFTSFEDIIKGNASTDVLIDVIGEFIDIQQHIDESIPRKLVVVMKDQSGHTISWTLWEEYESQVFSFLGTHEGGPIIMLLSLALIKEAKGNSPVTVQNTKVHSRLYINEDIDEINKFKSSLDSTHVYESYSQKLSQLSSSSHVTQGETFIQDANVMSLAKINETQEEIFCLTVGKIEMIYVSNGWQYDACVKCSKKLESETEPFICARCGKLNSERVPRFRLEVKVSDKNAHSKFILWDKHCVQLLNQSALDLKKQMIQEEGVFDPMELPGPIDSILGKVLAFKIKIQLKYKGYSVHQISEDPQIIESIIGSIKKNEGAGKIEKGKLVCSGVNEVDYMDSVSNFHVNSPKQYCYTKPVYF. 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06621 472 Gene3D - 3 101 IPR012340 -
Seca11g06621 472 PANTHER OS03G0429900 PROTEIN 8 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g06621 472 SUPERFAMILY Nucleic acid-binding proteins 112 238 IPR012340 -
Seca11g06621 472 Gene3D - 106 243 IPR012340 -
Seca11g06621 472 SUPERFAMILY Nucleic acid-binding proteins 9 101 IPR012340 -
Seca11g06621 472 Gene3D - 250 422 IPR012340 -
Seca11g06621 472 Pfam Domain of unknown function DUF223 36 130 IPR003871 -
Seca11g06621 472 CDD RPA1_DBD_B_like 132 234 - -
Seca11g06621 472 SUPERFAMILY Nucleic acid-binding proteins 272 409 IPR012340 -
Seca11g06621 472 CDD RPA1_DBD_A_like 19 99 - -
Seca11g06621 472 Pfam Replication factor-A C terminal domain 285 398 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06621 Seca-Chr11 166612652 166617515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06621 1 374 Core DNA Replication Machinery Family AT5G08020 23.990 2.18e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06621 - - gmx:102661204 274.633