Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g06618 | ATGGCATTCAGCGGAACCCAACAAAAATGCAAGGCTTGCGACAAAACCGTTCACTTCGTCGATACATTATCTGCCGATGGTGTTGTTTATCACAAGAACTGCTTCCGATGCAGTCATTGCAATGGCCTTCTTGTGATTAGCAACTATTCATCAATGGAAGGAGTTTTGTACTGCAAGGTTCACTTTGAGCAGCTTTTCAAGGAAACCGGCACCTTCACCAAGAAATTTCAATCTGTTACATATATGGTTTTGAATTACTTGTTTTTACAGCCTAGGGCCCCAAGCAAACTTTCTGCCTTCTTCTCTGGGACTCAAGACAAATGTTCATTATGCAAGAAAACAGTATATCCATTAGAAAAGTTGACAGTGGAAGGTGAGTTTTATCACAAGTCATGCTTTAGGTGTACACATGGAGGATGTTACCTCACCCCTTCAACCTACGCTGCTCTTGATGGATATCTATACTGCAAGCCTCACTTCTCTCAGTTGTTCAAGGCAAAAGGTAGCTATAGTTATCTCTCCAAGACAGCTTCAATGAAGAAAAATGAAATGGAACAACAAGCTGTGGAATCAGCACCAGAAGATACAGAGACAACAGCAAAGGAAGAACAAGAACAAGAACAGGATGCTGCTGCACTCACACAAGAGGTGTAG | 654 | 0.419 | MAFSGTQQKCKACDKTVHFVDTLSADGVVYHKNCFRCSHCNGLLVISNYSSMEGVLYCKVHFEQLFKETGTFTKKFQSVTYMVLNYLFLQPRAPSKLSAFFSGTQDKCSLCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCYLTPSTYAALDGYLYCKPHFSQLFKAKGSYSYLSKTASMKKNEMEQQAVESAPEDTETTAKEEQEQEQDAAALTQEV. | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g06618 | 217 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Seca11g06618 | 217 | MobiDBLite | consensus disorder prediction | 183 | 217 | - | - | |
| Seca11g06618 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 134 | 172 | - | - | |
| Seca11g06618 | 217 | ProSiteProfiles | LIM domain profile. | 106 | 166 | IPR001781 | - | |
| Seca11g06618 | 217 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Seca11g06618 | 217 | SMART | lim_4 | 107 | 159 | IPR001781 | - | |
| Seca11g06618 | 217 | Pfam | LIM domain | 108 | 163 | IPR001781 | - | |
| Seca11g06618 | 217 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Seca11g06618 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Seca11g06618 | 217 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Seca11g06618 | 217 | Gene3D | Cysteine Rich Protein | 102 | 172 | - | - | |
| Seca11g06618 | 217 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
| Seca11g06618 | 217 | FunFam | LIM domain and actin-binding 1 | 102 | 172 | - | - | |
| Seca11g06618 | 217 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Seca11g06618 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 100 | 133 | - | - | |
| Seca11g06618 | 217 | PANTHER | OS06G0237300 PROTEIN | 5 | 78 | - | - | |
| Seca11g06618 | 217 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Seca11g06618 | 217 | CDD | LIM1_SF3 | 6 | 68 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca11g06618 | Seca-Chr11 | 166579960 | 166581745 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Seca11g06618 | LIM | 2e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g06618 | - | K24413 | gmx:100499865 | 330.102 |