Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06615 ATGTGGATCATTTGGGAACGGCGCAAGGTACTGTCGGAGCTCGCCTGCTCCTTCAAGGTGGTTCGCAACATGGGCGGTGGTCCTCGGACGTTTCCCGGCGGAGTGAGCAAGTGGAAGTGGAAACGCATGCACGAGAAGCGAGCCAGAGACAAACAGAGAAGGCTTCTCGACCAAGAGAAGCAACTCTACCAGGCTCGAATTCGCTCCCAAATACGCTCCTCCCTCTCTCCCTCTCCTTCTTCCTCCACCCACCGCCCCCTCACCCCCCGCGATCACATCAAAGCCCTCGCTGATCGATTCATGAAGGAAGGCGCCCAAGATCTCTGGAACAACCACGATGGTCCCCAAGCCCAAGCCCAAGCCCAAGCCCAAACCCAACCGCAGGTGAATTTACGCAAACTCATGCCGAATAGGAATTTGACGAATTATACACAGACTAGGGATTACCGTTCTGTTCCTGAGGTTAGAAATAAGGACGATGGACATCGTCGTGTAAGCACCAACAAGGGCAGAATTTGGAGAAACCGTAGGTATGGGTCTTCCACTGAGAGTGACTGTGAGAGTGAGAATGAAATGGAATCTCAGGGTCACTATTCTAAGATCGGTAGTATTGCTTCTTTGGGGAAACATGATGTGAAGAGGGAAAGGAGGGTGATGCCCAAGTCCTATGATGAGGAAACTGATTTCTCGGAACAGGTTGAATTGATCAAGTATCAGCTTCATAAGAGGAAGTTGAGCCAGAATGAGGAACAAGAACAACAAAACATCCTGAGTCAGACAAGATTTGATGAGTGCGGTATATCACCATTGACAGTCAAGGCACTTTCTTCAGCTGGTTACATTCATATGACCCGGGTGCAAGAGGCTAGCCTCCCTATTTGCCTAGAGGGTATGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCTTTTTTGGTACACCCTAGTTCTTTTAACGTACTGCATCGAATTTTGTTTCCTTCTATCAATTACGCTAAATGCAAACAGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAAAACATCTCAACGTGTGCCTCCAATACTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTCTGCTGAGATATCATGATGGAATTGGGGCGCAGACACTAGTAGGAGGTGTACGATTTAAAGTCGATCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTGGCTACACCTGGTAGATTGCTGGATCATATTGAGAATAAGTCTGGAATATCTGTACGATTAATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTGGACCTGGGATTTCGAAAGGATATAGAAAATATCATTGATTGTTTGCCCCGTCAAAGGCAGTCCTTGCTGTTTTCTCCAACCATCCCAAAGGAGGTCCGTCGAATATCTCAGCTTGCTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAGTGGGTTGTGTGGAAACTCCTGTTCAGGTAAAGCAATCTTATCTTATCGCTCCACATGAATCTCATTTTCAAATAGTACACCATATTTTGAAGGAACATGTCTTGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATTACTGGGATGGTAACATCACTCATGTATCACCTTCTTCGGGAAATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGCTCTATAGAACTCGCATATCAGATGAGTTCAGGGAATCCAAACAAATGATTCTTGTCTCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGAATTCCATCAGACCGTGAACAATATATACATCGTCTAGGAAGAACAGGACGGGAAGGCAAAGAAGGGGAAGGCATATTATTGATTGCTCCATGGGAAGAGTATTTTTTAAATGAAATCAAGGATCTCCCTCTAAAGAAATCCCCCTTACCAGAAATAGATCCACAGATAAAGCTTAAGATTGAGCATTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAAAAGACCACTATAGCTGATCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCACTTAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 2262 0.4408 MWIIWERRKVLSELACSFKVVRNMGGGPRTFPGGVSKWKWKRMHEKRARDKQRRLLDQEKQLYQARIRSQIRSSLSPSPSSSTHRPLTPRDHIKALADRFMKEGAQDLWNNHDGPQAQAQAQAQTQPQVNLRKLMPNRNLTNYTQTRDYRSVPEVRNKDDGHRRVSTNKGRIWRNRRYGSSTESDCESENEMESQGHYSKIGSIASLGKHDVKRERRVMPKSYDEETDFSEQVELIKYQLHKRKLSQNEEQEQQNILSQTRFDECGISPLTVKALSSAGYIHMTRVQEASLPICLEGMDALVKAKTGTGKSAAFLVHPSSFNVLHRILFPSINYAKCKQLPAIETVLKAMSSKTSQRVPPILVLILCPTRELASQIAAEAKVLLRYHDGIGAQTLVGGVRFKVDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIENIIDCLPRQRQSLLFSPTIPKEVRRISQLALKREHKYVDTVGVGCVETPVQVKQSYLIAPHESHFQIVHHILKEHVLQTPDYKVIVFCITGMVTSLMYHLLREMKMNVREIHSRKPQLYRTRISDEFRESKQMILVSSDVSSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLNEIKDLPLKKSPLPEIDPQIKLKIEHSMAKIDNDIKEAAYHAWLGYYNSIREIGREKTTIADLANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06615 753 MobiDBLite consensus disorder prediction 109 130 - -
Seca11g06615 753 PANTHER RNA HELICASE 222 682 - -
Seca11g06615 753 MobiDBLite consensus disorder prediction 68 86 - -
Seca11g06615 753 Pfam Helicase conserved C-terminal domain 532 636 IPR001650 -
Seca11g06615 753 Pfam DEAD/DEAH box helicase 284 486 IPR011545 GO:0003676|GO:0005524
Seca11g06615 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 678 IPR001650 -
Seca11g06615 753 Coils Coil 41 61 - -
Seca11g06615 753 SMART helicmild6 556 637 IPR001650 -
Seca11g06615 753 CDD SF2_C_DEAD 513 646 - -
Seca11g06615 753 Gene3D - 508 732 IPR027417 -
Seca11g06615 753 SMART ultradead3 279 514 IPR014001 -
Seca11g06615 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 498 IPR014001 -
Seca11g06615 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 655 IPR027417 -
Seca11g06615 753 MobiDBLite consensus disorder prediction 111 130 - -
Seca11g06615 753 MobiDBLite consensus disorder prediction 68 90 - -
Seca11g06615 753 Gene3D - 238 500 IPR027417 -
Seca11g06615 753 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 260 288 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06615 Seca-Chr11 166553275 166557912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06615 260 667 Eukaryotic Initiation Factors Gene Family AT3G19760 26.291 4.75e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06615 - - gmx:100808520 1056.59