Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06600 ATGAATGTGTCATCAATTCCAGTTGCTGAAGGTGTAGAGAAATGGGTCAACGATATTCACAACAATATTGTGCAACATGGAAAAGAATGTGTTGTTGACTATGCACCACAATTGGGAATGGAGTTTGAATCAGAGGTTGTGGCCTATAAATTTTACAATGAGTATAGTAAGAGAGTTGGGTTTGGTATTCGTCGAGAATATGGAAATAAAAGCAAAAAAGACGGAATTTTGACTTCAAGAAGATTCTCATGCTTCAAGGAGGGTAAACGAAGCGTTGACAAACGTGACCACTTGACAAAAGAGCCTAGAGCAGAAACCAGAACAGGATGTGAAGCACGTATGGTTATTTCACTTGATCGGAAGATAGGGAAATACAAGGTTATTGACTTTGTAGCTCAACATAATCACCCTCTTCAATCTCCAGAATATGCCTATATGATTCGCTCTCATCGAAATATTTCTGAGTCACAAGCATCACAAATTGTATTGGCGGATGAATCTGGGTTAAAACCAAAAGATTTTCATGAATATGTGTCCAAGCAAGTTGGTGGAATAAACAATGTTGGTTATACAAGGACTAAAAGGAATCAGTCTTTAAGGTATGGTGAAGTTGGTGCATTGTTGATGTACTTCAAACAACGAAGTGAAAATCCTTCATTCTTTTATGACTTTCAAATGGATGTTGAAGAGCAAATAACAAATATATTTTGGGCAGATGCACAAATGATAAATGATTATGGATACTTTGGTGATGTCATCACTTTTGACACCACATACAAGACAAATAAGGATTACCGACCCCTAGGAGTATTTGTTGGGCTTAATAATCATAGGCAAACAATTGTTTTTGGGGCAACATTGCTATATGATGAAACCATCCCTTCTTTTCAATGGTTATTTGAAACTTTCCTCAAAGCAATGGGTGGAGAAAAGCCTAAAACAATTCTAACAGATCAAGATGCAGCAATGGCAAAGGCTATTTCTTTAGTTATGCCAGAAACATTTCATGGATTATGCACTTGGCATATTAGAGAAAATGCCCTAAGACATGTGAACCATCTTTATCAAAAGAGTTCACAATTTTGCTCAGATTTTGAAGCATGCATTGATCTACATGAGGAGGAAGGTGAATTTCTGAATGCATGGAATGATTTACTTGTTGATCATAATGTTTCCGATGACTCATGGCTACATGGGATTTTTCGAGTGAAGGAAAAGTGGGCATGGGCTTATGTTCGAAAAACTTTCACGGCAGGTATGAGATCAACTCAATTAAGTGAGAGCTTTAATGCTGATCTGAAAAACCATTTGAAGTCAGATTTAAATTTGGTACAATTTTTCACACACTTTGAAAGAGTTGTAAATGGAAAAAGGAACAATGAGTCAGAAGCCGAATATGAGTCAAGACATAAGCTTCCTAGATTGAAAATGAAGAAGGCCCCTATGCTTGTGCAAGCTGGAAACATTTACACTCCAAAGCTTTTTCAGGAGTTCCAAGAGGAATATGAGGAATTTCAAGGCACTTGCATAAAGGAATTGAAAGAAGGGTTCTATATTGTTACAAATTATGATAACATTAAGGAACGGATAGTAGTGGGGAATGTGGTGGATCAAAAGGTTACATGTGATTGTCGGAAATTTGAGACTCATGGTATCTTATGCAGTCATGCTTTGAAAGTTTTGGATGTGATGAATATCAAGTTAATTCCTCAGCACTATATACTAAAGCGATGGACAAGAGATGCAAGGTTGGGAAGTAACCGAGATTGGAAAGGACAACATATTGAGTTGGACATAAAAGCCCATTTCACGAAGAGATATAATGCGTTATGTCCTCGAATGATTAAATTGACAGATAGAGCATCTGAATCTCATGAAACATATACCTTTTTGTCCAAAGTTTGTGAAGAGTCCAACAAAATAATTAATGTTATGTTGGCTGCAACATCTATGGGTGGAGAATCAATGGGAAAGTGTGATGTATCCATATCAATTGCAAATGAGAAAATTGACAACAATGTGAACAACATTGATTTTGGTGGGGCGAAAGGCATAAAGAAGCGAGATTCCTCACATAAGGGTAAAAAACGACCTAAATCTTGGGTTGAGAAGTTGGCTCGAAAAAGAAAGGCAAACCTAGCACAAAAAAAGAGAAAGACTCAAGAAAATTTGGTAATTTATTGCTTACTTTCTTTTTTTTGA 2202 0.366 MNVSSIPVAEGVEKWVNDIHNNIVQHGKECVVDYAPQLGMEFESEVVAYKFYNEYSKRVGFGIRREYGNKSKKDGILTSRRFSCFKEGKRSVDKRDHLTKEPRAETRTGCEARMVISLDRKIGKYKVIDFVAQHNHPLQSPEYAYMIRSHRNISESQASQIVLADESGLKPKDFHEYVSKQVGGINNVGYTRTKRNQSLRYGEVGALLMYFKQRSENPSFFYDFQMDVEEQITNIFWADAQMINDYGYFGDVITFDTTYKTNKDYRPLGVFVGLNNHRQTIVFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPETFHGLCTWHIRENALRHVNHLYQKSSQFCSDFEACIDLHEEEGEFLNAWNDLLVDHNVSDDSWLHGIFRVKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDLNLVQFFTHFERVVNGKRNNESEAEYESRHKLPRLKMKKAPMLVQAGNIYTPKLFQEFQEEYEEFQGTCIKELKEGFYIVTNYDNIKERIVVGNVVDQKVTCDCRKFETHGILCSHALKVLDVMNIKLIPQHYILKRWTRDARLGSNRDWKGQHIELDIKAHFTKRYNALCPRMIKLTDRASESHETYTFLSKVCEESNKIINVMLAATSMGGESMGKCDVSISIANEKIDNNVNNIDFGGAKGIKKRDSSHKGKKRPKSWVEKLARKRKANLAQKKRKTQENLVIYCLLSFF. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06600 733 Pfam FAR1 DNA-binding domain 50 139 IPR004330 -
Seca11g06600 733 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 640 IPR031052 GO:0006355
Seca11g06600 733 Pfam SWIM zinc finger 538 562 IPR007527 GO:0008270
Seca11g06600 733 SMART 26again6 540 567 IPR006564 GO:0008270
Seca11g06600 733 Pfam MULE transposase domain 252 346 IPR018289 -
Seca11g06600 733 ProSiteProfiles Zinc finger SWIM-type profile. 517 565 IPR007527 GO:0008270
Seca11g06600 733 ProSiteProfiles WRKY domain profile. 65 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06600 Seca-Chr11 166456807 166459138 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g06600 MULE 8.7e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06600 - - tpra:123895462 1114.37