Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06593 ATGGAGTGGAATTTGAAAGCACCTTCTTGGGATTTGACTGAAGTGGATCAGGAAACGTTACCCAACATAGAAACAATGGATGGTTTAAGCAGATTTGGAGCTTATAGAACCAAAGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTAGCACAGAATCAGTGCTTACCAAGTCCAACAAAGATGCTGGTGGAGTCTCCAAAATGACATCTTCAGGGTCATCTAAGAGAGCTCGAGCCATAAACAATGGGACACAGAGAGTGTCATGCCTTGTGGATGGGTGCCAATCAGATCTTAGTACCTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAATCCATTCCAAGACAGCACAGGTCACAATTGGTGGCCACAAGCAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAACGCTTAGATGGGCACAACCGACGGAGAAGAAAGCCTCAACCAGAACCTCTCACGCGTTCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCCTTCTCAAGTTCACATGTATACCCTACCACTGCTATGGTGAATCCTGCTTGGGGTGGAGGTGTTGTTACTTCCTGTGCAGATGTAAGGCTTCATGGCCACAGTCAACACCAACAAATGCATTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCTCCAACAAGCTATAAAGAAGGGAAGCAATTGGCATTCATACAAGGTGACCAGCCCACGCCCACTCTCAGCAACCAAAGCCCACATCTTCCAGCTGCTGCTTCCATGAGGCCCAGCCCATTTTCAGAAAGCAACGGGCTGAGATGCAAATTGTTCTGTGATAGCCTAACAAGTTCGGTCCATGACTCTTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACGCACAATCCTGGAAATGGATTAAACCAGATGGTGAATCCTCACTCATCTTTTATGCAACCTTTAGGCCTGAGCCTGCATGATAACAGCTTGGGGTCAGTGGACCAAGTTTTGGGTCCTAACGAGAGTGATCATTGCGCCTCAATGTATAACATAGGTTCTAATAATGAATCCGCAGGGAATGAAGCCCCTCCACTATTTCCCTTTCAATGGGAATATAGGATTTTATAG 1173 0.4621 MEWNLKAPSWDLTEVDQETLPNIETMDGLSRFGAYRTKGEFSVDLKLGQVGNSSTESVLTKSNKDAGGVSKMTSSGSSKRARAINNGTQRVSCLVDGCQSDLSTCRDYHRRHKVCEIHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSGSFLSNYQGTQLLPFSSSHVYPTTAMVNPAWGGGVVTSCADVRLHGHSQHQQMHLVDKQDLFLGSSPTSYKEGKQLAFIQGDQPTPTLSNQSPHLPAAASMRPSPFSESNGLRCKLFCDSLTSSVHDSSCALSLLSSPQTHNPGNGLNQMVNPHSSFMQPLGLSLHDNSLGSVDQVLGPNESDHCASMYNIGSNNESAGNEAPPLFPFQWEYRIL. 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06593 390 FunFam Squamosa promoter-binding-like protein 14 84 154 - -
Seca11g06593 390 ProSiteProfiles Zinc finger SBP-type profile. 90 167 IPR004333 GO:0003677
Seca11g06593 390 MobiDBLite consensus disorder prediction 56 82 - -
Seca11g06593 390 Gene3D - 84 154 IPR036893 GO:0003677|GO:0005634
Seca11g06593 390 SUPERFAMILY SBT domain 91 172 IPR036893 GO:0003677|GO:0005634
Seca11g06593 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 377 IPR044817 GO:0003677
Seca11g06593 390 MobiDBLite consensus disorder prediction 157 178 - -
Seca11g06593 390 Pfam SBP domain 93 166 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06593 Seca-Chr11 166415368 166418333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06593 1 386 SBP-box Gene Family AT5G50670 44.081 4.84e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca11g06593 SBP 4.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06593 - - gmx:100806507 599.742