Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06572 ATGAATCTAAGTGTGCAAATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAGATTGCCTCCTGGATTTCGTTTCCAGCCAACAGATGAAGAGCTTGTCTTTCAGTACTTGAAATGTAAGGTCTTCTCATGCCCCTTGCCAGCTTCCATCATTCCTGAGATCAATGTCTCTAAGTACGATCCTTGGGATTTGCCAGGTTTAGGAAATTGTGATGAGCAAGAGAGGTACTTTTTCAGCTCAAAGGAAGCTAAGTATCGAAATGGTAATCGCATGAACAGAACAACCAAATGTGGGTATTGGAAAGCAACAGGGTCAGACAAAAGAATATCATCTCCAATGTGTAATGGTATTGTAGGAATAAGAAAAACACTGGTTTTTTATGAAGGGAAATCTCCAAATGGATCAAAAACTGATTGGGTTTTGCATGAATATCGCCTCGTTAGTGTAGAAACTAGTGCTTGCAACTCAACCCAACAGAGCTATGTAAATGAGATAGGAGATTGGGTTCTTTGTCGCATAATGATGAAGAAAAGAAGTATAGAAAGTGATGGAAGCACCACTCATCATCACCATCACATGCATAGAAGGGCTCCTCCAAGATTGTTTGATTTCATGATGGTGAGCAAGACATGTTCTTCTACATCCTCTTCATGTTCAAGTTCAAGTAACATGATAGAGGTCTCTTCAAATGCACAAGACCATGAAGAAACAAGTACTGGATATGCTGATTTTTAA 738 0.3916 MNLSVQMEKLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKVFSCPLPASIIPEINVSKYDPWDLPGLGNCDEQERYFFSSKEAKYRNGNRMNRTTKCGYWKATGSDKRISSPMCNGIVGIRKTLVFYEGKSPNGSKTDWVLHEYRLVSVETSACNSTQQSYVNEIGDWVLCRIMMKKRSIESDGSTTHHHHHMHRRAPPRLFDFMMVSKTCSSTSSSCSSSSNMIEVSSNAQDHEETSTGYADF. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06572 245 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Seca11g06572 245 Gene3D NAC domain 29 182 IPR036093 GO:0003677|GO:0006355
Seca11g06572 245 SUPERFAMILY NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
Seca11g06572 245 ProSiteProfiles NAC domain profile. 20 177 IPR003441 GO:0003677|GO:0006355
Seca11g06572 245 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06572 Seca-Chr11 166167430 166169054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06572 7 180 NAC Transcription Factor Family AT5G13180 63.218 1.57e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g06572 NAM 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06572 - - gmx:100803200 367.081