Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06565 ATGGCAGCTTTTTCATACCAACACCATCCCTTTCTTGTTGACTCTGCATGCTTCCCCAATACTCCCACTAACATGTCTTTTTTTGTGGAGAAACCTCATATAAACACTTCCCTTCCTCCTCACCATTTTCACATTCATCAGGACAAGACATTTAGTGCCACAAATCAGGAAATTAGCTGTGTTGATCAAAGCTCCAAGGTTACCATCAGTGACACAGAGCTCTCTGTGGTAAAAAACCAGAGTCCTGAGACTTCCATGGTAGTGGACAAGCTTGAAAACGGTGAACAGGTCACTCAGAAGGTGATTCCTATGGAGAAGAAGAGAAAAGCCAGAAATAGATCTTCCCTGAGTAGCCCCCTTTCTAAGGACTCAACAGAAGGGGGAAAGAAGAAGCAAAAGAAGAACAATGGTGGGGTGAAAGGAGAGGACAAGCCAAAAGAAGAGAAGAAAGAACAGAAAAAAGGTTCTGAAGAGCCTCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAAGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGACTTTGCAACGACTTGTGCCAGGCTGTGATAAGGTAACGGGAAAGGCCCTTGTGTTAGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTTTTGTCTATGAAACTTGCTTCCGTGAATCCCATGTTCTTTGACTTTGCAATGGACCTAGACACCCTCTTGGTTAGACCAGATCAGAAACTAAATAGCATAGCATCACCATCACCATCAGCACTACCATGTGTACCACTATGCAACCCCAACCAGGCTACAGCTTTTGCTGATACAACCACTCTGACCTCCACCTTCCCAGCTGCTAATAATGATTATCTTTTAGATTATTCATCCTCAGTTTTTCTTCAAGGACAGGGGTCAAATAATCTCTTCATGGAGTATACCGCTGGTTCGTTTTGGGACGCAGAAGACCAACGACAAAAGTTTCTTAATCCATATGGATTCGGCAACAATTCATGTTCCTTAAATTAA 1056 0.4299 MAAFSYQHHPFLVDSACFPNTPTNMSFFVEKPHINTSLPPHHFHIHQDKTFSATNQEISCVDQSSKVTISDTELSVVKNQSPETSMVVDKLENGEQVTQKVIPMEKKRKARNRSSLSSPLSKDSTEGGKKKQKKNNGGVKGEDKPKEEKKEQKKGSEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDFAMDLDTLLVRPDQKLNSIASPSPSALPCVPLCNPNQATAFADTTTLTSTFPAANNDYLLDYSSSVFLQGQGSNNLFMEYTAGSFWDAEDQRQKFLNPYGFGNNSCSLN. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06565 351 MobiDBLite consensus disorder prediction 85 181 - -
Seca11g06565 351 FunFam Basic helix-loop-helix transcription factor 169 241 - -
Seca11g06565 351 SMART finulus 178 228 IPR011598 GO:0046983
Seca11g06565 351 MobiDBLite consensus disorder prediction 124 181 - -
Seca11g06565 351 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 78 268 IPR024097 GO:0006355
Seca11g06565 351 CDD bHLH_AtBPE_like 162 247 - -
Seca11g06565 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
Seca11g06565 351 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Seca11g06565 351 Gene3D - 169 240 IPR036638 GO:0046983
Seca11g06565 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06565 Seca-Chr11 166106562 166109761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06565 1 271 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 43.478 7.48e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g06565 HLH 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06565 - - gmx:100790417 414.461