Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06562 ATGGCTCCCTCCGACCAATCACGCCACTCTCTTATCCCTGGATTCTTATACTCATCAAAAGCACTCTCCCATTTGGATACTTCCATCAACTCCAATCATCATGTGTTGCCACCTGCACCCACCACCTCCTCCATTAATGCATCATCACAGGGTAGGACTAGGAGTACTCCTATGATCCCTGCACCAAAGGAGGGTATCCGCATGTTTTCTCCTGCTTACTACGCTGCATGCAGTGCCGGTGGCGTCTTCAGCTGTGGCCTTACCCACATGGCCGTCACTCCTCTTGATCTAGTCAAGTGCAACATGCAGATTGATCCTATAAAGTATAAGAACATCACATCAGGATTTGGAGTTTTGATGAAGGAGCAGGGGGCTAAAGGTTTCTTCAGGGGTTGGGTGCCGACTTTGCTTGGCTACAGTGCTCAAGGAGCGTGCAAGTTTGGGTTTTATGAGTTCTTCAAGAAGTATTACTCAGATCTTGCAGGACCTGAGAATGCAGTCAAGTACAAAACTTTTATCTATCTAGCTGGTTCTGCTTCAGCTGAGGTTATTGCTGATATTGCCCTTTGTCCCATGGAAGCAGTCAAAGTTCGTGTACAAACTCAACCTGGATTTGCTAGAGGTTTGGCTGATGGATTACCCAAGTTTATCAAGGCTGAGGGTGCTGCTGGGTTGTATAAAGGACTTGTTCCTCTTTGGGGCCGTCAAATTCCATGGAAGAAAATAACTGCTAATTTATATTTTTTGTGTCTATATACATATTACCCTTCTGTGGCATGCAAATTTTCATGTTGCTTTTTCCCCTTATACTCTTGGCTTCTGTCAGACACGATGATGAAATTTGCTTCCTTTGAGACTGTTGTGGAGATGATCTACAAATACGCCATGCCAGCCCCTAAAGAACAGTGCAGCAAAAATTTGCAGCTTGGAGTCAGTTTTGCAGCAGGATATATTGCAGGTGTACTGTGTGCAATTGTCTCACACCCTGCTGACAATCTCGTTTCTTTTCTCAACAATGCTAAAGGAGCCACTGTTGGTGATGCTGTGAAGAAGATTGGTTTAATGGGTCTTTTCACTCGTGGCCTTCCTCTTCGTATTGTTATGATTGGAACACTAACTGGAGCACAGTGGGGACTATATGATTCATTTAAAGTATCTGTAGGGCTGCCTACAACTGGTGGAAGTGCTCCTGCACCTACAAAATAG 1206 0.4478 MAPSDQSRHSLIPGFLYSSKALSHLDTSINSNHHVLPPAPTTSSINASSQGRTRSTPMIPAPKEGIRMFSPAYYAACSAGGVFSCGLTHMAVTPLDLVKCNMQIDPIKYKNITSGFGVLMKEQGAKGFFRGWVPTLLGYSAQGACKFGFYEFFKKYYSDLAGPENAVKYKTFIYLAGSASAEVIADIALCPMEAVKVRVQTQPGFARGLADGLPKFIKAEGAAGLYKGLVPLWGRQIPWKKITANLYFLCLYTYYPSVACKFSCCFFPLYSWLLSDTMMKFASFETVVEMIYKYAMPAPKEQCSKNLQLGVSFAAGYIAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKIGLMGLFTRGLPLRIVMIGTLTGAQWGLYDSFKVSVGLPTTGGSAPAPTK. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06562 401 FunFam Phosphate carrier protein, mitochondrial 59 163 - -
Seca11g06562 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 253 IPR018108 -
Seca11g06562 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 307 386 IPR018108 -
Seca11g06562 401 MobiDBLite consensus disorder prediction 37 56 - -
Seca11g06562 401 Pfam Mitochondrial carrier protein 171 247 IPR018108 -
Seca11g06562 401 Pfam Mitochondrial carrier protein 75 158 IPR018108 -
Seca11g06562 401 SUPERFAMILY Mitochondrial carrier 274 381 IPR023395 -
Seca11g06562 401 Gene3D Mitochondrial carrier domain 54 255 IPR023395 -
Seca11g06562 401 MobiDBLite consensus disorder prediction 37 60 - -
Seca11g06562 401 SUPERFAMILY Mitochondrial carrier 73 259 IPR023395 -
Seca11g06562 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 72 156 IPR018108 -
Seca11g06562 401 Gene3D Mitochondrial carrier domain 261 398 IPR023395 -
Seca11g06562 401 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 50 240 IPR044677 GO:0005315|GO:1990547
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06562 Seca-Chr11 166057905 166060909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06562 5 399 Chloroplast and Mitochondria Gene Families AT5G14040 67.910 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06562 K15102 - gmx:100800530 611.683