Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06559 ATGAACTGGCCAACATGGAAAGCCATGGCAATGACTGTGGTGTTGCTTCAGCTGAGTTTTTCTATGGAAATCTTCTGTCTCTCTTCTCATGCAGATAGAATTGATCTGCTTCCTGGTCAACCCCACATAGGCTTCCAACAGGTCTCAGGATATGTTACAGTGGATGACATGAAACACAAGGCTCTCTTTTACTATTTTGTTGAATCAGAAACTGATCCAGCTTCAAAGCCTCTGGTCCTCTGGCTCAATGGAGGACCTGGTTGTTCTTCTCTTGGAGTGGGTGCATTCTCTGAAAATGGACCTTTCAGACCCAATGGGGAAGTTCTGATTAAAAATGAGCATAGTTGGAACATAGAGACAAACATGTTGTATTTGGAGACACCAGTTGGAGTGGGGTTCTCTTATGCTAAAGGTAACTCCTCCTATATGACAGTAAATGATGACACAACAGCCAGGGACAATCTTGTATTCTTGCAACGCTGGTTCATCAAATTCCCTCAATACAGAAACAGAGATTTGTATCTAACAGGAGAAAGTTATGCAGGGCATTATGTTCCACAACTTGCAAAGCTCATGATTGAAATCAACAAAAAGGAGAAGATATTCAATCTGAAAGGCATAGCATTGGGTAATCCAGTTCTAGAATATGCCACTGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCACGGATTAATATCAGATTCTACATACAAAATGTTCACTACAGGCTGTAATTATTCTAAGTACGTCAGTGAATACTATAGAGACTCAGTTTCTCCTCTTTGTTCAAAGGTTATGGGCCAAGTAAGCAGAGAAACGAGTAAATTTGTGGATAACTATGATGTCACCCTTGATGTTTGCATTTCCTCAGTGCTATCACAATCCAAAGTTATTTGCCCTCAAACCCAACAAGGAAATGAGAGTATAGATGTATGTGTAGATGACAAGGTTACAAATTATCTAAACCGAAGAGATGTACAGGAGGCACTTCATGCCAAGCTTGTTGGAGTTAGAAAGTGGGATGTCTGCAGCAACATCCTGGACTACGATATGCTCAACCTGGAAGTACCTACACTGCCTGTTGTTGGATCACTCATAAAAGCTGGAATTCGTGTCTTAATTTACAGTGGAGATCAAGATTCAGTAATTCCATTGACTGGAAGCCGGACCTTGGTTCAAAAGCTGGCAAAACAATTAGGACTGAATACAACAGTACCTTACAGAGTATGGTTTGCAGGCCAGCAGGTTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTGGTTCGTAAGCGCACTGCCAATTATCGCTCTTCTGGCTTCCCTCACCGCCTTTCCACCACCATGCCTTCTACTTCTAGAGAATCGATTGAGGAGCCAAAATGGAGCCTGCAACCTGATCAAACAGAAATTAGCCTGTGGGAGAGGCTTGGGAATGCTGCAATGTTGGATATTGAATCAAGCTCATTTTCTTGGGACATGCTCTCTTCACTGCACCACACTGAACACAGCAGTAGCAATGAACATTCTGAGGATGAAATGAACAAAGCTCTTGAGGTAACTGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATTGCCTGGGAAGTGCTGAAGCTTCTCCACTAGAAGCAGCAGCTGTTATAAAGATATCATCATCAAGAATGGCAACACAATCTGAACGCCTGGGCTATGAATTCGCCAAGTGGATGGGAATCCAAACTCCACAGGCTAGAGTAATTCACAATACCAGTTCAGAATGGCAACAAATAAAGGAAGCTGCGGAAAGAGCTAGAGACGCAGCAAATTCTGAGGGTGATGAAATTGGCGAAGTGACATGTTTTGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAGCTATGTACATGGTTCACCTTTGCTTGAAAATTCTAGTGCATTTGAGTCACGGGATTCTGCAGAAAGAACAGCAGAAGCTCTTGGCAGGGTACTGATGCTGGACCTTGTCATCAGAAACGAAGATAGGCTCCCTTGCCGTGAGCTTAGATGGCGTGGGAATTCTGCAAATTTGTTGTTGGCTGAAAAGCTGATCTCTGCAAATACAGATACACTAGAAGCAGCTTTTGATTCTGCAATTAATCGATACAGACCAAAGGTGATTAGGGCACTTCAAAAAGAAAGAAGGTCAACTTCAGTAGATAGCAGATTAAATTCTCATAATCCTGGCTTGATATCACAAGCCTCTGATCTTTCAGAGATTGCAGAATCACCAAGATCAACTGACACTAGCCTTAAAAGTCAAACATCAGGAGAAGCACTGTCTTCTGACCTTAACATTGTAGCCATTGATTCTGGTGTTCCTCGGCGACCCCCTGCTGGAAAACGTGCAAATGATCAGGTTAATTACCCTAAGTTGGTTGAGTTGCTGATCAATAGTTCTGAGTATGCCTCAAACCTCTTATATGATATAACTGGAGGGAAATTAGGATATCCTCCACCAGAAGACATGGATACAAGTGATGTACATGCAAGTGATATCACATCAGTAGTTCATGCATTCCGTACTGGTTTCCGTGCTGCTCTTAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTTCACCAAAGACTTGATACTTTGTTAAGATCATTTTTGAACATCATAAGCAAAATATCTTCAGGGGAATCTGACAAAGAAGATTCATTGGTTCCTGACTCACCTTCACTGGCTGCTGGTGGTAGTTGTTACTCTCCAACAAGTAAGGAGAGGCTTGCTAATGATAACCATCAAGACTTTAGTAATAGAGATGGCTGTGACTCTACTCCTATGTCAAGAGAAAGTTGGCATGGAAAGTTCTATAAAGGAAATGGGGAGCCACTTCGTAATCTCCGCTTAACAGCTAAGCTCCGTGATTTCCATAAATTTGCCAAGGTTGATGCTGAATCTAATAAGGAAATGGAACAGTGGAATGAAATGCTTAAAAATGATGCAATCAAGCTATGCCAGGAGAACAATTTCAATACAGGATTTTTCGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTCAAGGTCAGACTTGAGCATATACTTGAGAGAATTGCACTGATATCTGAGGCTGCAAGTACAGAGAGACCATCTGCTGTTACAAGTACTCTATTCATCGGTGGAGCTCTGGCTGCAAGATCTGTATACACACTGCAATACTTGGGAATCACACATATTTTGTGTTTGTGTACCAATGAAATCGGACAATCTGAATCTCAGTTTCCTGATCTGTTTGAGTACAAAAATTTCTCTGTGTGTGACAGTGAAGATTATAACATCAGCTGTATATTTGAAGAAGCGTGTGATTTTATAGATCATGTTGAACAAGCAGGTCAGAAAGTTTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGCTACATTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTACACTTTATTAGAAGCATGGCAAGCTCTGAAACGAGTTCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGCTCTTACAGGAACTGGATCAGAAACTATATGGGAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAACTATGAAAGTTTGCCCTATCTGTGGGAAAAACGCTGGACTAAGCAGCAGCTCACTTAAGTTGCATCTGCAGAAATCACATAGAAAGCTATCATCTGGGAGTGTAGATAGTGCCATGACAATGGAAATCCAGAAGGCATTAACAGCTTTGAAGATTAGCCGTGGTGGTAGTGTCAGCCCCACACAAAGGTCGTCTCATTCAATAATAGATCAATAG 3855 0.4195 MNWPTWKAMAMTVVLLQLSFSMEIFCLSSHADRIDLLPGQPHIGFQQVSGYVTVDDMKHKALFYYFVESETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLIKNEHSWNIETNMLYLETPVGVGFSYAKGNSSYMTVNDDTTARDNLVFLQRWFIKFPQYRNRDLYLTGESYAGHYVPQLAKLMIEINKKEKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYKMFTTGCNYSKYVSEYYRDSVSPLCSKVMGQVSRETSKFVDNYDVTLDVCISSVLSQSKVICPQTQQGNESIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNILDYDMLNLEVPTLPVVGSLIKAGIRVLIYSGDQDSVIPLTGSRTLVQKLAKQLGLNTTVPYRVWFAGQQVLYMLGDITAGPAFRFTQWLQLVRKRTANYRSSGFPHRLSTTMPSTSRESIEEPKWSLQPDQTEISLWERLGNAAMLDIESSSFSWDMLSSLHHTEHSSSNEHSEDEMNKALEVTVNSGGVVFFAFFNCLGSAEASPLEAAAVIKISSSRMATQSERLGYEFAKWMGIQTPQARVIHNTSSEWQQIKEAAERARDAANSEGDEIGEVTCFELLEALELSRCLFFMSYVHGSPLLENSSAFESRDSAERTAEALGRVLMLDLVIRNEDRLPCRELRWRGNSANLLLAEKLISANTDTLEAAFDSAINRYRPKVIRALQKERRSTSVDSRLNSHNPGLISQASDLSEIAESPRSTDTSLKSQTSGEALSSDLNIVAIDSGVPRRPPAGKRANDQVNYPKLVELLINSSEYASNLLYDITGGKLGYPPPEDMDTSDVHASDITSVVHAFRTGFRAALRDLQGFHIFLLTLHQRLDTLLRSFLNIISKISSGESDKEDSLVPDSPSLAAGGSCYSPTSKERLANDNHQDFSNRDGCDSTPMSRESWHGKFYKGNGEPLRNLRLTAKLRDFHKFAKVDAESNKEMEQWNEMLKNDAIKLCQENNFNTGFFEGSDNNSVVDAYELKVRLEHILERIALISEAASTERPSAVTSTLFIGGALAARSVYTLQYLGITHILCLCTNEIGQSESQFPDLFEYKNFSVCDSEDYNISCIFEEACDFIDHVEQAGQKVLVHCFEGRSRSATLVLAYLMLRKKYTLLEAWQALKRVHRRAQPNDGFAKLLQELDQKLYGKVSMEWQQRKPTMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSSHSIIDQ. 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06559 1284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1057 1202 IPR020422 GO:0006470|GO:0008138
Seca11g06559 1284 Pfam Dual specificity phosphatase, catalytic domain 1073 1198 IPR000340 GO:0008138|GO:0016311
Seca11g06559 1284 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 415 1283 IPR035010 GO:0004721|GO:0009737|GO:0043622
Seca11g06559 1284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1126 1178 IPR000387 GO:0016311|GO:0016791
Seca11g06559 1284 Gene3D - 649 765 IPR036940 -
Seca11g06559 1284 SMART dsp_5 1057 1199 IPR020422 GO:0006470|GO:0008138
Seca11g06559 1284 Gene3D Protein tyrosine phosphatase superfamily 1040 1212 IPR029021 -
Seca11g06559 1284 Gene3D - 359 449 - -
Seca11g06559 1284 Pfam Actin-fragmin kinase, catalytic 480 793 IPR015275 -
Seca11g06559 1284 CDD DSP 1058 1195 - -
Seca11g06559 1284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1057 1202 IPR029021 -
Seca11g06559 1284 FunFam Dual specificity protein phosphatase PHS1 1029 1203 - -
Seca11g06559 1284 MobiDBLite consensus disorder prediction 743 780 - -
Seca11g06559 1284 SUPERFAMILY alpha/beta-Hydrolases 40 415 IPR029058 -
Seca11g06559 1284 Gene3D - 313 349 - -
Seca11g06559 1284 SUPERFAMILY Protein kinase-like (PK-like) 434 808 IPR011009 -
Seca11g06559 1284 ProSitePatterns Tyrosine specific protein phosphatases active site. 1144 1154 IPR016130 GO:0016311|GO:0016791
Seca11g06559 1284 Pfam Serine carboxypeptidase 42 413 IPR001563 GO:0004185|GO:0006508
Seca11g06559 1284 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Seca11g06559 1284 Gene3D alpha/beta hydrolase 29 290 IPR029058 -
Seca11g06559 1284 FunFam Carboxypeptidase 27 425 - -
Seca11g06559 1284 MobiDBLite consensus disorder prediction 735 780 - -
Seca11g06559 1284 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Seca11g06559 1284 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Seca11g06559 1284 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06559 Seca-Chr11 166021629 166035460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06559 416 1268 Protein tyrosine phosphatase (PTP) family AT5G23720 65.753 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06559 K14165 - gmx:100791993 1456.81