Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g06557 ATGGCGACATCAGAGGTATCAATCAAGGGAAATTCGATTAACGAAAAAGGAGAAAATAACCCCTGTGCTTACGACAACAACGATGCAGCAGAGGGTCAAAATGGTCCTTCATCGTCAACAGCGAGAGACGCAGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCGGGTCCCCTTGTAACGGTTCCAAGAGAAGGAGAACGCGTGTTCTATTTTCCTCAGGGACATATTGAGCAGGTGGAGGCGTCGACGAATCAAGTAGCGGAACAGCACATGCCAGTTTACGATCTTCCACCAAAGATCCTCTGTCGGGTAATCAACGTGATGCTGAAGGCTGAGCCAGATACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCGGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCTCCACCGGCCCCGCCACCACGATTTCATGTTCATTCATTTTGTAAAACGTTGACGGCGTCAGATACGAGTACCCATGGTGGGTTTTCAGTACTGAGACGACATGCCGATGAATGCCTTCCTCCCCTGGATATGTCAAAGCAACCACCTACCCAGGAATTGGTGGCCAAAGATCTGCATGCTAACGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCACGGAGGCACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTCAGCTCTAAAAGGCTGGTAGCTGGGGATGCATTTATATTTCTGAGATGTGAGAATGGGGAACTCCGAGTGGGTGTTAGGCGTGCAATGAGGCAGCAGGGTAATGTTCCATCGTCAGTCATCTCTAGCCACAGCATGCATCTCGGTGTCCTGGCAACTGCTTGGCATGCTATATTGACTGGGACCATGTTTACTGTTTATTACAAACCTAGTCTAATATTGTCAATATTATTATTTTGCAGGACCAGTCCAGCTGAATTTATTGTTCCATATGACCAATACATGGAGTGTCTAAAAAATAATTATACCATAGGTATGCGGTTCAAAATGAGGTTTGAAGGAGAAGAGGCTCCTGAGCAAAGGTTTACTGGCACCATTGTTGGAATTGAAGATGCTGACCCCAAAAGATGGCCGAAATCTAAATGGAGAAATCTGAAGGTGAGATGGGATGAAACATCTAACATACCTCGGCCTGAGAGAGTTTCCCCATGGAAAATAGAGCCTGCTCTTGCTCCTCAAGCTCTAAATCCTCTTCCTATGCCTAGGGCTAAAAGGCCTCGATCTAATGTGTTTCCATCATCCCCAGATTCTTCTGTTCTTACTCGAGAAGCAACATCTAAAGTAAGCATAGACCCTTTGCCAGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAACTGTCGACCTTGAGAGGTAATTTTGCAGAAAGCAACGAGTCTGATGATGCAGAGAAGTCTGTTGTGTGGCCACCTGCAACAGATGATGAAAAGATTGATGTTGTTTCTGCTTCAAGAAGGTATGGATCAGAGAGCTGGATGTCAATGGCAAGGCATGAGCCAACGTATTCAGATCTCCTTTCAGGCTTTGGATCCCATGGAGATCATTCTTCCCATCCATCATTTATTGATCAGACCGGTCCTGTAGCTATCCCTGGTAGGAAAAGTTTGTTGGATCGGGAAGGCAAACATAATGTGCTTAGTCCATGGCCTGTAATGCCGTCTAGTCTATCACTCAACCTCTTGGAATCTAATAATACAAAAGGTTCTGCACAAGGTGGTGACACAACTTATCAAGTTCGAGGGAATTTGAGGTATAGTGCATTTGGTGAATACTTTGTGCTTCATGGACATAAAGATGAACATCCACATGGAAATTTTATGATGCTGTCACCACCTCCAAATCAATATGAGAGTCCTCATTCAAGAGAACTGTTGCCCAAACAAATATCAGCAAGAACTTGTGAGGTTGCAAAACCAAAAGATGGTGACTGTAAATTATTCGGCATCTCACTTCTCAGTAGCCCTATTGCACCAGAGCCTTCTATGTCACAAAGAAATGTTGCAACTGAGCCAGTTAGTCACATGAATCTTACATCACGGCATCATACATTTGAAAATGATCAGAAGTCACCGGAAGATGATCCAGCTGTAGTTGATGACCATGAGAAGCTGTTACCGACTTCTCAGCCTCATCTTAAAGATGTTCAACTCAAACCTCATAATGGTTCTGCCAGAAGTTGCACTAAAGTTCACAAAAAAGGGATTGCACTTGGTAGGTCAGTGGACCTTACAAAGTTCAAGGACTATGATGAATTAATTGCTGAATTGGATCAACTCTTTGAATTTGGAGGTGAACTAAAATCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGTGACATGATGCTTGTTGGTGATAATCCGTGGCAGGAGTTTTGTGCCATGGTCCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGCACCTTAAGTTCAAGAAATGAAGAGAATTAA 2496 0.4455 MATSEVSIKGNSINEKGENNPCAYDNNDAAEGQNGPSSSTARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRCENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPSLILSILLFCRTSPAEFIVPYDQYMECLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPKSKWRNLKVRWDETSNIPRPERVSPWKIEPALAPQALNPLPMPRAKRPRSNVFPSSPDSSVLTREATSKVSIDPLPASGFPRVLQGQELSTLRGNFAESNESDDAEKSVVWPPATDDEKIDVVSASRRYGSESWMSMARHEPTYSDLLSGFGSHGDHSSHPSFIDQTGPVAIPGRKSLLDREGKHNVLSPWPVMPSSLSLNLLESNNTKGSAQGGDTTYQVRGNLRYSAFGEYFVLHGHKDEHPHGNFMMLSPPPNQYESPHSRELLPKQISARTCEVAKPKDGDCKLFGISLLSSPIAPEPSMSQRNVATEPVSHMNLTSRHHTFENDQKSPEDDPAVVDDHEKLLPTSQPHLKDVQLKPHNGSARSCTKVHKKGIALGRSVDLTKFKDYDELIAELDQLFEFGGELKSPQKDWLIVYTDNEGDMMLVGDNPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEEN. 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g06557 831 Gene3D - 327 399 - -
Seca11g06557 831 MobiDBLite consensus disorder prediction 1 42 - -
Seca11g06557 831 MobiDBLite consensus disorder prediction 682 704 - -
Seca11g06557 831 FunFam Auxin response factor 327 399 - -
Seca11g06557 831 Pfam B3 DNA binding domain 154 255 IPR003340 GO:0003677
Seca11g06557 831 SUPERFAMILY DNA-binding pseudobarrel domain 150 283 IPR015300 -
Seca11g06557 831 ProSiteProfiles B3 DNA-binding domain profile. 154 256 IPR003340 GO:0003677
Seca11g06557 831 ProSiteProfiles PB1 domain profile. 731 813 IPR000270 GO:0005515
Seca11g06557 831 MobiDBLite consensus disorder prediction 1 41 - -
Seca11g06557 831 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 820 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca11g06557 831 Gene3D - 151 256 IPR015300 -
Seca11g06557 831 FunFam Auxin response factor 726 820 - -
Seca11g06557 831 Pfam AUX/IAA family 728 818 IPR033389 -
Seca11g06557 831 Gene3D - 727 820 - -
Seca11g06557 831 SUPERFAMILY CAD & PB1 domains 733 808 - -
Seca11g06557 831 MobiDBLite consensus disorder prediction 686 704 - -
Seca11g06557 831 FunFam Auxin response factor 152 256 - -
Seca11g06557 831 MobiDBLite consensus disorder prediction 401 424 - -
Seca11g06557 831 CDD B3_DNA 152 254 IPR003340 GO:0003677
Seca11g06557 831 SMART B3_2 154 256 IPR003340 GO:0003677
Seca11g06557 831 Pfam Auxin response factor 280 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g06557 Seca-Chr11 165996062 166001444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g06557 1 830 B3 DNA Binding Superfamily AT5G62000 65.962 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca11g06557 AUX_IAA 1.6e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g06557 - - gmx:100815956 1384.78